DRSC/TRiP Functional Genomics Resources

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Protein Alignment vret and tdrd1

DIOPT Version :10

Sequence 1:NP_651092.1 Gene:vret / 42695 FlyBaseID:FBgn0263143 Length:691 Species:Drosophila melanogaster
Sequence 2:NP_001157500.1 Gene:tdrd1 / 553522 ZFINID:ZDB-GENE-070803-1 Length:1176 Species:Danio rerio


Alignment Length:407 Identity:87/407 - (21%)
Similarity:157/407 - (38%) Gaps:87/407 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   322 SGSKVRITAFEQTNVVYVRSADIQIDIAYYTVLTEVMMLGKDASKLQSTPVCGQIVLYKFEGHMS 386
            |.|::.....|..:::    ..:|:::..:...|..   ..|......|..|.   |:..:....
Zfish   417 SPSEILCQKLENASII----QQLQMNLRVHCSNTAA---SDDFRPAPGTVCCS---LFSEDNQWY 471

  Fly   387 RAMVLNVDNIKEIYVVFIDFGSVEVTQLERLYECSSYLAGLTCYPVAVKLRGVP----------- 440
            ||.||...:...:.|.:||||:.|..:|.||...|..|..|....:...|.|:.           
Zfish   472 RAKVLAYSSEDRVCVGYIDFGNSEEVELNRLRPISKELLALATQAIPCSLAGIKSLTDTWSDEAV 536

  Fly   441 --------RRFVGPNI------REVMYELDQS---------LVFNIKYSSRE-YDTSKGMQVVVM 481
                    .||:...|      |.::..:|:|         |:.|:.:::.| .:|.|       
Zfish   537 LMLKHLVCNRFIRVEILGKKDGRALVSMIDESSDPQASVTELLVNMGFAAIESVETKK------- 594

  Fly   482 TEIDINRSLNRLFKTILTPV-EPSVSDLGYKEDCLPYIPLHCGKNINVVVMDNTFIQCGFIYCTS 545
            .|.|...|      |.:.|: :|.|..|.:....||:    .|:.:.:|:  :|.......||.:
Zfish   595 NEPDPATS------TEIPPLSQPVVEKLEWTGAELPF----DGQKVELVI--STLKSLDEFYCYN 647

  Fly   546 IDLAYE--VTKMQRDIQEYGEKIAKCATYAPPINELCIAKYEG--KWRRGLSVELVGDGYPSILF 606
            .....|  :|:|..::.::.|  ::.|.:.|.:.|.|.|.:.|  :|.|.:.:|:.|:|...:.|
Zfish   648 YSKTDEHTLTEMSFELMKHCE--SERAPFTPIVGEPCCALFTGDARWYRAMVLEVCGEGKARVCF 710

  Fly   607 IDYGNIVPTHVTDIRPYPPQFI-FPIMTTQLDLIGVPEKPTDEQIKW----------LDKNYPI- 659
            :||||........::......: .|....:..|.||  :|.:.|  |          |....|: 
Zfish   711 VDYGNSCEVDAAHLKAITQSLLKLPFQAIRCWLAGV--EPVEGQ--WKKEAMLRFQALCAGQPLS 771

  Fly   660 GSVITCSEITFDEETNS 676
            |.|::.:|..:..|..|
Zfish   772 GKVLSITEKGYGMELES 788

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vretNP_651092.1 TUDOR 322..438 CDD:425754 26/115 (23%)
Tudor_vreteno-like_rpt1 371..424 CDD:410515 16/52 (31%)
TUDOR 524..640 CDD:425754 26/120 (22%)
Tudor_vreteno-like_rpt2 576..631 CDD:410516 14/57 (25%)
tdrd1NP_001157500.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..32
zf-MYND 83..119 CDD:460312
Tudor_TDRD1_rpt1 178..306 CDD:410479
Tudor_TDRD1_rpt2 429..510 CDD:410480 20/90 (22%)
Tudor_TDRD1_rpt3 674..732 CDD:410481 15/57 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 828..853
Tudor_TDRD1_rpt4 881..995 CDD:410482
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1061..1090
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1116..1137
Blue background indicates that the domain is not in the aligned region.

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