DRSC/TRiP Functional Genomics Resources

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Protein Alignment vret and Tdrd6

DIOPT Version :10

Sequence 1:NP_651092.1 Gene:vret / 42695 FlyBaseID:FBgn0263143 Length:691 Species:Drosophila melanogaster
Sequence 2:NP_001419573.1 Gene:Tdrd6 / 316254 RGDID:1305956 Length:2129 Species:Rattus norvegicus


Alignment Length:520 Identity:112/520 - (21%)
Similarity:197/520 - (37%) Gaps:162/520 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   238 TIPLSTVAV--TEEDKTKSLLEDGVSKCVVCQNWTDTFCKLCK-MPFCNASCFADVAEQHKQACG 299
            |:.||.::.  |.:||.|           |..:.|.....|.| .|.|               ||
  Rat   731 TVSLSNISTGQTAQDKEK-----------VTSDPTLLMLNLLKTKPDC---------------CG 769

  Fly   300 KGEILNLDEKVGRKYPKPGLPPSGSKVRITAFEQTNVVY---VRSADIQIDIAYYTVLTEVMMLG 361
            |||:     :||          |..:|:::..|.....:   :|:|.     .:.|::.::    
  Rat   770 KGEL-----EVG----------STVEVKVSHIENPGSFWCQLMRNAQ-----GFRTLMCDI---- 810

  Fly   362 KDASKLQSTPVCGQ----IVLYKFEGHMSRAMVLNVDNIKEIYVVFIDFGSVEVTQLE------- 415
            :|..|.:.:|..|.    :......|..|||::....:::.:.|||:|:|..:|..::       
  Rat   811 EDYCKSEPSPYEGDTRACLAKRTANGRWSRALISGAQSLEHVRVVFVDYGDKDVVSMKDILSVSD 875

  Fly   416 -------RLYECSSY--LAGLTCYPVAVKLRGVPRRFVG--PNIREVMYELDQSLVFNIKYSSRE 469
                   :.:.||.|  :......|.....|.: :.|.|  .|..:...|| :..:|.:  :||.
  Rat   876 VFFKVRAQAFRCSLYNLIQPTGENPFVWDERAI-QAFTGFIDNAWQNNLEL-KCTIFAL--ASRH 936

  Fly   470 YDTSKGMQVVVMTEID------INRSLNRLFKTILTPVEPSVS---------DLGYKEDCLPYI- 518
            .:....: |.::|...      :.:.|.|..| :..|:||||.         ||....:.|.|| 
  Rat   937 EEECFNV-VDLLTPFQSACHFLVEKRLARPVK-LQKPLEPSVQLHSYYYSTHDLKIGSEELVYIT 999

  Fly   519 ------PLHC--GKNINVVVMDNTFIQCGFIYCTSIDLAYEVTKMQRDIQEYGEKIAKCATYAPP 575
                  ..:|  .:|.|::.                .|:|.:.::.:.:..     .:.:|..| 
  Rat  1000 HADDPWTFYCQLARNTNILE----------------QLSYHIMQLSKVLLN-----LRTSTLVP- 1042

  Fly   576 INELCIAKY-EGKWRRGLSVELVGDGYPS-ILFIDYGNIVPTHVTD--IRPYPPQ----FIFPIM 632
             ..||:||| :|.|.||:.:|    ..|| :.|:|:||   |:|..  :.|.|..    .:.|:.
  Rat  1043 -GTLCLAKYTDGNWYRGIIIE----KEPSKVFFVDFGN---TYVASDHLLPIPRDAYDVLLLPMQ 1099

  Fly   633 TTQLDLIGVPEKPTDEQIKW-----LDKNY--------PIGSVITCSEITFDEETNSYSTRIEKL 684
            ..:..|..:|....:|...|     |||:.        |.|.:|.  |: :||.....::..|||
  Rat  1100 AVKCSLSDIPHHIPEEVTAWFQETVLDKSLKALVVAKDPDGRLII--EL-YDESVQINASINEKL 1161

  Fly   685  684
              Rat  1162  1161

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vretNP_651092.1 TUDOR 322..438 CDD:425754 24/138 (17%)
Tudor_vreteno-like_rpt1 371..424 CDD:410515 15/72 (21%)
TUDOR 524..640 CDD:425754 28/123 (23%)
Tudor_vreteno-like_rpt2 576..631 CDD:410516 20/62 (32%)
Tdrd6NP_001419573.1 Tudor_TDRD6_rpt1 6..136 CDD:410491
Tudor_TDRD6_rpt2 239..379 CDD:410492
Tudor_SF 494..628 CDD:470623
Tudor_SF 773..892 CDD:470623 25/142 (18%)
Tudor_SF 981..1105 CDD:470623 33/153 (22%)
Tudor_SF 1313..1427 CDD:470623
Tudor_SF 1528..1670 CDD:470623
Blue background indicates that the domain is not in the aligned region.

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