DRSC/TRiP Functional Genomics Resources

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Protein Alignment vret and Rnf17

DIOPT Version :10

Sequence 1:NP_651092.1 Gene:vret / 42695 FlyBaseID:FBgn0263143 Length:691 Species:Drosophila melanogaster
Sequence 2:XP_038949233.1 Gene:Rnf17 / 305908 RGDID:1310486 Length:1650 Species:Rattus norvegicus


Alignment Length:577 Identity:101/577 - (17%)
Similarity:185/577 - (32%) Gaps:215/577 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   200 IQRYLNVKYEFALERHDIYKLKDETRIPQVVL----------------HFRSGRTIPLSTVAVTE 248
            :|:..|.|.|...   |:|...::.|:..|||                |.......|...|.|..
  Rat   319 VQKKFNSKKELCC---DVYSSLEKKRVDTVVLADEAPVPPLQAETPDRHLEGENKQPQKEVLVVA 380

  Fly   249 EDKTKSLLED-GVSKCVVCQNWTDTFCKLCKMPFCNASCFADVAEQHKQACGKGEILNLDEKVGR 312
            ..||.::|.. |.|..|:.:                     ::.|::.::|...|.:...     
  Rat   381 SPKTVAVLPQLGSSPDVIIE---------------------EIIEENLESCFTDEPIETP----- 419

  Fly   313 KYPKPGLPPS-------GSK------VRITAFEQTNVVYVRSADIQIDIAYYTVLTEVMMLGKDA 364
            :|||.  ||.       .||      |.::........|||.         |:.:.:..||.|..
  Rat   420 RYPKK--PPQKELSAPVASKAGCPELVFVSHVTHPCHFYVRK---------YSQIKDAAMLEKKM 473

  Fly   365 SKLQSTPVC---------------GQIVLYKFEGHM-SRAMVLNV-----DNIKE---------- 398
            .:     ||               .:|.:...:..| .|.::..:     .|:::          
  Rat   474 KQ-----VCSKSLHLDPSDTLELGARIFVNSIKNRMWCRGIITEIIPTKTKNVRKPCSPTKFSVC 533

  Fly   399 ----IYVVFIDFGSVEVTQLERLYECSSYLAGLTCYPVAVKLRGVPRRFVGP-NIREVMYEL--- 455
                |.:..:|||:.||                      :.:.||....||| ::.|....|   
  Rat   534 EISLIQIFMVDFGNSEV----------------------LIITGVGDTHVGPEHVGEQHITLSDF 576

  Fly   456 ----------DQSLVFNIKYSSR--------EYDTSKGMQVVVMTEIDINRSLNRLFKTIL---- 498
                      .:.|:.:|.:.:.        .|::|:|.:  ...:::..:.:|:  |.:|    
  Rat   577 CLLVRKSEPYSEELLKDIPHLAHLCSLKDIVPYNSSEGWE--KEAKVEFLKMVNK--KAVLMKVF 637

  Fly   499 -------------TPVEPSVSDLGYK-EDCLPYIPL----------HCGKNINVV-----VMDNT 534
                         .|.....||:... .|.|.::.|          | |:|...:     .:...
  Rat   638 GEEDDILIVDLQKPPTNKISSDMPVSLRDALVFMELARFRSQSLRSH-GENNTALCYRPPALPEE 701

  Fly   535 FIQCGFIYC---TSIDLAYEVTK------MQRDIQEY--GEKIAKCATYAPPINELCIAKYE-GK 587
            ..:...:.|   :..|...::.:      :.:.|:|:  ||.........|..|:.|:||:| |.
  Rat   702 MTEVSVMVCHINSPTDFYLQLMENLDFLSLLKTIEEFYKGEDGENLEILCPLQNQACVAKFEDGI 766

  Fly   588 WRRGLSVELVGDGYPSILFIDYGNIVPTHVTDIRPYPPQFIFPIMTTQLDLIGVPEK 644
            |.|...:.|.|.....:.::|:||.....:.|:|....:|:.|           |||
  Rat   767 WYRAKVIGLPGHREVEVKYVDFGNTAKITLKDMRKIKDEFLEP-----------PEK 812

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vretNP_651092.1 TUDOR 322..438 CDD:425754 22/163 (13%)
Tudor_vreteno-like_rpt1 371..424 CDD:410515 12/87 (14%)
TUDOR 524..640 CDD:425754 25/132 (19%)
Tudor_vreteno-like_rpt2 576..631 CDD:410516 16/55 (29%)
Rnf17XP_038949233.1 RING_Ubox <44..79 CDD:473075
CC_brat-like 137..>242 CDD:475168
Tudor_TDRD4_rpt1 490..566 CDD:410485 15/97 (15%)
Tudor_TDRD4_rpt2 728..823 CDD:410486 25/96 (26%)
Tudor_TDRD4_rpt3 968..1049 CDD:410487
Tudor_TDRD4_rpt4 1247..1314 CDD:410488
Tudor_TDRD4_rpt5 1504..1608 CDD:410489
Blue background indicates that the domain is not in the aligned region.

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