DRSC/TRiP Functional Genomics Resources

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Protein Alignment vret and tsn-1

DIOPT Version :10

Sequence 1:NP_651092.1 Gene:vret / 42695 FlyBaseID:FBgn0263143 Length:691 Species:Drosophila melanogaster
Sequence 2:NP_494839.1 Gene:tsn-1 / 173811 WormBaseID:WBGene00006626 Length:914 Species:Caenorhabditis elegans


Alignment Length:755 Identity:140/755 - (18%)
Similarity:247/755 - (32%) Gaps:281/755 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 WSAFDPMSREYYDQVGNR--YTNESGQKLIMEAPLPPKDEKEQRATRQAKYPYLVVPKSS----- 67
            |.::.|.|..|   .|:|  :|.:..:.::.:|.:..||:..:.....:.   :.:|:.|     
 Worm   326 WKSYQPTSSAY---SGDRKAFTGKVVEIVLSDAVVVQKDDGSEVKLHLSS---IRLPRESGDDKA 384

  Fly    68 ---PYVTEKMLINFFGRALIKEMEFRRLSRVYFVYFENIASLETAQQRVQRYPNLIKCITGRPQK 129
               |           ||      :||.|..:.|::              |....|.|.:.|   |
 Worm   385 TGGP-----------GR------QFRPLYDIPFMF--------------QAREFLRKRLLG---K 415

  Fly   130 EREITSDPV-TSTEPMPTPGPAISATERTPVNHNREVPISTGGQNHPEFFRPPLVTK-------- 185
            :.:|..|.| ..:|..|         |:|...      |..|.||..|    .|:::        
 Worm   416 KVQIQIDYVQPKSENFP---------EKTCAT------IKIGDQNIAE----GLISRGLSKVVRH 461

  Fly   186 --DDYKRGS----LLATNDPIQRYLNVKYEFA---LERHDIYKLKDETR--------IPQV---- 229
              ||..|.|    |||.....::  ..|..||   .|:.|.:::::.|.        :|.:    
 Worm   462 RADDENRSSEYDTLLAAEANAEK--GKKGLFADKTAEKKDTHRIQEITGDLAKAKQFLPYLQRGG 524

  Fly   230 ----VLHFRSGRT-----IPLSTVAVTEEDKTKSLLEDGVSKCVVCQNWTDTFCKLCKMPFCNAS 285
                |:.|.||.:     ||..||.:|       .|..|::                        
 Worm   525 RAEGVVEFLSGGSRLRIYIPKETVLIT-------FLLGGIN------------------------ 558

  Fly   286 CFADVAEQHKQACGKGEILNLDEKVGRKYPKPGLPPSGSKVRITAFEQTNVVYVRSADIQIDIAY 350
                        |.||      .:||     ||...:|:   ...|......:.|...:|.::..
 Worm   559 ------------CPKG------ARVG-----PGGVSTGA---AEPFADEAAAFTRKLVLQHEVQL 597

  Fly   351 YTVLTEVMMLGKDASKLQSTPVCGQIVLYKF---EGHMSRAMVLNVDNIKEIYVVFIDFGSVEVT 412
                           :::||...|..|.|.:   :|:.|||:     |:.|. :|.....|:..|
 Worm   598 ---------------EVESTDKNGNFVGYLYVSPDGNTSRAI-----NLSEA-LVENGLASLHFT 641

  Fly   413 QLERLYECSSYLAGLTCYPVAVKLRGVPRRFVGPNIREVMYELDQSLVFNIKYSSREYDTSKGMQ 477
             .||   ...|.|.|:....|.|    .::.:..|..|..::.:..:        ::.|||:..|
 Worm   642 -AER---SGHYNALLSAENKAKK----AKKNIWANFTEEQHQEEVEV--------QQADTSERKQ 690

  Fly   478 VVVMTEIDINRSLNRLFKTILTPVEPSVSDLGYKEDCLPYIPLHCGKNINVVVMDNTFIQCGFIY 542
                          ...:..:|.:.|......                                 
 Worm   691 --------------NFRQVAVTDIAPGALRFS--------------------------------- 708

  Fly   543 CTSIDLAYEVTKMQRDI-QEYGEKIAKCATYAPPINELCIAKY--EGKWRRGLSVELVGDGYPSI 604
            ..:|:...::.||..:: |...|......:|.....:||:||:  :|:|.| ..||.|..|...|
 Worm   709 AQNIEDGPKIEKMTTEMRQALAEHPPLAGSYTTKRGDLCVAKFSQDGQWYR-CKVESVRAGQAEI 772

  Fly   605 LFIDYGNIVPTHVTDIRPYPPQFI-FPIMTTQLDLIGVPEKPTDEQIK----------------W 652
            ::|||||........:...|..|. ||....:.:| .:.:.|.::.::                :
 Worm   773 VYIDYGNRETIEAVKLAQIPAGFANFPAGVREYNL-ALAKLPNEDYVQLTSDAFAQYLFGHSSVF 836

  Fly   653 LDKNYPIGSVITCSEITFDEETNSYSTRIEK--LQEFLSL 690
            ::..|.:|   |...:|...::.:....|.|  :.|.|:|
 Worm   837 INSEYKVG---TSEYVTVYYDSGNKKVDIGKSLIAEGLAL 873

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vretNP_651092.1 TUDOR 322..438 CDD:425754 25/118 (21%)
Tudor_vreteno-like_rpt1 371..424 CDD:410515 14/55 (25%)
TUDOR 524..640 CDD:425754 28/119 (24%)
Tudor_vreteno-like_rpt2 576..631 CDD:410516 20/57 (35%)
tsn-1NP_494839.1 SNc 22..168 CDD:214615
SNc 193..328 CDD:214615 1/1 (100%)
SNc 341..492 CDD:214615 40/208 (19%)
SNc 524..668 CDD:214615 43/229 (19%)
Tudor_TDRD11 714..796 CDD:410504 23/82 (28%)
SNc 758..904 CDD:469627 26/121 (21%)
Blue background indicates that the domain is not in the aligned region.

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