DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6985 and rad54b

DIOPT Version :9

Sequence 1:NP_651091.1 Gene:CG6985 / 42694 FlyBaseID:FBgn0039017 Length:501 Species:Drosophila melanogaster
Sequence 2:XP_688979.4 Gene:rad54b / 560482 ZFINID:ZDB-GENE-060810-50 Length:917 Species:Danio rerio


Alignment Length:860 Identity:148/860 - (17%)
Similarity:249/860 - (28%) Gaps:398/860 - (46%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MRR----------AAKR---------ESEAAP---PKEEPQSPCSWP----KNNL---------- 29
            |||          |||:         .::.||   |:.||..|...|    ||.|          
Zfish     1 MRRSGAPSQLRGNAAKKPRFMPPGPARNDGAPCLDPQPEPSQPSPPPIPALKNVLLNKVQRCLSS 65

  Fly    30 ---PSEWGTSGGTQSLG-------PR------------EFRAGENPL-KDSR------------- 58
               |:......|:::|.       |:            :|...|..: ||.|             
Zfish    66 GDAPAASDAPVGSKALARVLGAAVPQGECKENHIRSMPDFPEPEESVNKDRRSPPLNTHASCTTT 130

  Fly    59 --IFHVLWRNQTTKKHKTWTGNGTLVVTGSIVTLKDDTGKVVDTMTYFKQRQLQ---ENDQLEVG 118
              .:.|:|...:::|||.|.|:..||..|..|.|||..|:.:...:.:|..:|:   |...|.||
Zfish   131 AHYYSVIWCKASSRKHKRWEGDAVLVARGRTVVLKDMEGRDIGRGSGYKASELESLCEGQTLMVG 195

  Fly   119 SKDVEI----------------------------------------------------------- 124
            .|.:|:                                                           
Zfish   196 GKQIEVMGVISDQDYAKGRCFQDAAVEIPAESPTVSKTPAYRPVSKSFTKPALKGGALTDSELDK 260

  Fly   125 ----------------------------------------------------QEEIKTVEECLIQ 137
                                                                :|.:..:.|||:.
Zfish   261 PICKPRYDPNAPGALVMPRPTADHQWQYNKSGAPLVDVVIDPHLTNHLRPHQKEGVVFLYECLMG 325

  Fly   138 RQLE-------------------------------------------------IANWCQK----- 148
            .:|.                                                 :.||..:     
Zfish   326 MRLAGRCGAILADEMGLGKTLQCVCVLWTLLRQGPYGGRPVMKRALVVCPGSLVKNWAAEFNKWL 390

  Fly   149 ---------IDAQNGCTDTSPPPADSAPVRSH--LLKKIKR--EADAFAPPHLEISQHREDKHVS 200
                     :|..:...|....|..|..|.|:  ||:.:.|  |.| |.....:.....::.::.
Zfish   391 GRERISVYTVDQDHRVEDFVSSPLCSVLVISYEMLLRSVDRLKELD-FGVLICDEGHRLKNSNIK 454

  Fly   201 YAAADSSTS------------------------------MG-----KKIYEQNTLKIENP--TKE 228
            .|.|.::.|                              :|     :||||:..|:...|  |:|
Zfish   455 TAGALTALSCTRRLILTGTPVQNDLQEFYSIIEFVNPGILGTSAAYRKIYEEPILRSRQPSCTEE 519

  Fly   229 ------------------FT--------------QSEYLCLLTPAELQKKI--LLFVSEYAQTSK 259
                              ||              :.|:.....|.|||.::  :|..:...:...
Zfish   520 ERCIGEERAAELFRLTGVFTLRRTQEIINQYLSERIEWTVFCKPTELQIRLYRVLLSTRPIRACL 584

  Fly   260 TESST------------LKEIFQIVCDHPVLLKTLGTNPVFKEIMEVLD--------AILPPWPS 304
            :.|.|            ||::    |:||.||        :..:.|..|        .:.|...|
Zfish   585 SGSHTYTHSPHLVCINALKKL----CNHPALL--------YNTLQEKADEMYEGEVKELFPEEYS 637

  Fly   305 MGLYDSAKFEFLHVMLDHLVA----ERGEKCCILANSEDCLTLVRGYCQSYSLDHAQLDGP---- 361
            .|.:.:|....|.|:.|.|.|    .|.::..:::|....|.|::..|........:|||.    
Zfish   638 TGAFSTADSGKLLVLTDLLSAIQHVNRTDRVVLVSNHTQTLDLLQDVCDQIGYKWCRLDGQTPVG 702

  Fly   362 --QK-VNLFNSLADGEPMIGLILTSDLS--ALRALRCKHLIIYNHNSRQQANQLLAVGAM----- 416
              || |:.|||......:  |:|:|...  .|..:...||::|:.: ...||.:.|:..:     
Zfish   703 QRQKIVDSFNSPHSSSFL--LLLSSKAGGVGLNLIGASHLVLYDID-WNPANDIQAMARVWRDGQ 764

  Fly   417 --DTKIYTLITAGGSPE-----ELQFYGHMGDDSIEDLQNCRSQLIPTASNNLADWTKSEPPFDR 474
              ...||..:|.|...|     ::...|..|  ::.||.. :::.|..::..|.|..:.:|    
Zfish   765 KKTVHIYRFLTTGSIEEKIYQRQVSKQGLSG--TVVDLTK-KAEHISFSAEELRDLFRFDP---- 822

  Fly   475 VFFEETAIS-DSLDC 488
               ..|.:: |.|:|
Zfish   823 ---NTTCLTHDLLNC 834

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6985NP_651091.1 DUF2439 60..128 CDD:287368 24/181 (13%)
rad54bXP_688979.4 SNF2_N 311..612 CDD:278600 46/305 (15%)
DEXDc 333..474 CDD:238005 17/141 (12%)
Helicase_C 646..763 CDD:278689 29/119 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0390
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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