DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG6985 and rad54l

DIOPT Version :9

Sequence 1:NP_651091.1 Gene:CG6985 / 42694 FlyBaseID:FBgn0039017 Length:501 Species:Drosophila melanogaster
Sequence 2:NP_957438.1 Gene:rad54l / 394119 ZFINID:ZDB-GENE-040426-968 Length:738 Species:Danio rerio


Alignment Length:456 Identity:92/456 - (20%)
Similarity:153/456 - (33%) Gaps:164/456 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    97 VVDTMTYFKQR---QLQENDQLEVGSKD-----VEIQEEIKTVEECLIQRQLEIANWCQKIDAQN 153
            ::.|...||:|   .:.:....:...||     .::||.|..|..|||:|               
Zfish   340 ILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRR--------------- 389

  Fly   154 GCTDTSPPPADSAPVRSHLLKKIKREADAFAPPHLEISQHREDKHVSYAAADSSTSMGKKIYEQN 218
                           .|.:|.|       :.|                                 
Zfish   390 ---------------TSDILSK-------YLP--------------------------------- 399

  Fly   219 TLKIENPTKEFTQSEYLCLLTPAELQKKIL-LFVS-----EYAQTSKTESSTLKEIFQI--VCDH 275
             :|||...        .|.|||  |||::. ||:.     |..||.|...|:|..|..:  :|:|
Zfish   400 -VKIEQVV--------CCNLTP--LQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNH 453

  Fly   276 PVLLKTLGTNPVFKEIM---EVLDAILPPWPSMGLYDSAKFE----FLHVMLDHLVA----ERGE 329
            |.|        ::::.:   |..|..|..:|..  |.:...|    ...::||:::|    ...:
Zfish   454 PAL--------IYEKCLTGEEGFDGALDLFPQN--YSTKAVEPQLSGKMLVLDYILAMTRTTTSD 508

  Fly   330 KCCILANSEDCLTLVRGYCQSYSLDHAQLDGPQK-------VNLFNSLADGEPMIGLILTSDLSA 387
            |..:::|....|.|....|::....:.:|||...       |..||:.:..|.:..|...:....
Zfish   509 KVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCG 573

  Fly   388 LRALRCKHLIIYN-----HNSRQQANQLLAVGAMDT-KIYTLITAGGSPEE-LQFYGHMGDDSIE 445
            |..:....|::::     .|..|...::...|...| .||.|::.|...|: ||...|.     :
Zfish   574 LNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHK-----K 633

  Fly   446 DLQNCRSQLIPTASNNLADWTKSEPPFDRVF----------FEETAISDSLD---CIQLVYSRKV 497
            .|.:|           :.|   .|...:|.|          ..|..:||:.|   |.:.|..|:|
Zfish   634 ALSSC-----------VVD---EEQDVERHFSLGELRELFSLNEKTLSDTHDRFRCRRCVNGRQV 684

  Fly   498 R 498
            |
Zfish   685 R 685

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6985NP_651091.1 DUF2439 60..128 CDD:287368 8/38 (21%)
rad54lNP_957438.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..31
Rad54_N <71..>117 CDD:285821
SNF2_N 150..457 CDD:278600 41/205 (20%)
DEXDc 172..321 CDD:238005
DEAH box. /evidence=ECO:0000255|PROSITE-ProRule:PRU00541 290..293
HELICc 484..613 CDD:238034 23/128 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0390
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.