DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dcr-1 and MRPL3

DIOPT Version :10

Sequence 1:NP_524453.1 Gene:Dcr-1 / 42693 FlyBaseID:FBgn0039016 Length:2249 Species:Drosophila melanogaster
Sequence 2:NP_013737.1 Gene:MRPL3 / 855039 SGDID:S000004626 Length:390 Species:Saccharomyces cerevisiae


Alignment Length:352 Identity:69/352 - (19%)
Similarity:118/352 - (33%) Gaps:117/352 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   669 RGTVKILNPEVFSKQPPTACDIKLQEIQDEL-----------PAAAQLDTSNSSDEAVSMSNTSP 722
            :.||..:...|.||.|......|..::.:||           |:|...|..|:..:..:..||.|
Yeast    81 KSTVNEIPESVASKSPSLRTLHKRLQLPNELTYSTLSRCLTCPSAKLPDKINNPTKGAAFVNTVP 145

  Fly   723 SE---------------------SSTEQKSRRFQCELSSLTEPEDTSDTTAEIDTAHSLASTTKD 766
            :.                     .|..||..|.               .|..::.|.:...:...
Yeast   146 TNKYLDNHGLNIMGKNLLSYHVTKSIIQKYPRL---------------PTVVLNAAVNAYISEAV 195

  Fly   767 LVHQMAQYREIE---QMLLSKCANTEPPEQEQSEAERFSACLAAYRPKPHLLTGASVDLGSAIAL 828
            |.| :|:|..||   ..:||:....||.|......:.|:..|.: :....|:||.:....||:|:
Yeast   196 LAH-IAKYWGIEVETTSVLSRYLKMEPFEFTLGRLKFFNNSLNS-KDGIELITGKNFSETSALAM 258

  Fly   829 VNKYCARLPSDTFTKLTALWRCTRNERAGVTLFQY------TLRLPINSPLKHDIVGLPMPTQTL 887
                      ...:.:.|:|..| .::....::::      :.:|.|....:.:     .||:.|
Yeast   259 ----------SVRSIIAAIWAVT-EQKDSQAVYRFIDDHIMSRKLDITKMFQFE-----QPTREL 307

  Fly   888 AR--RLAALQACV-----ELHRI------------GELDDQLQPIGKEGF---------RALEP- 923
            |.  |...|:..|     |..|:            ||     :.:| ||:         ||... 
Yeast   308 AMLCRREGLEKPVSKLVAESGRLSKSPVFIVHVFSGE-----ETLG-EGYGSSLKEAKARAATDA 366

  Fly   924 --DWECFELEPEDEQIVQLSDEPRPGT 948
              .|.|:|...:.|.::.      |||
Yeast   367 LMKWYCYEPLAQQEPVID------PGT 387

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dcr-1NP_524453.1 DEAD-like_helicase_N 15..208 CDD:475120
Dicer_PBD 240..344 CDD:277191
P-loop containing Nucleoside Triphosphate Hydrolases 490..614 CDD:476819
Dicer_dimer 825..916 CDD:460900 19/115 (17%)
PAZ_dicer_like 1091..1212 CDD:239209
RIBOc 1724..1930 CDD:238333
RIBOc 2008..2172 CDD:238333
DSRM_DICER 2177..2240 CDD:380680
MRPL3NP_013737.1 RIBOc 114..288 CDD:197778 35/201 (17%)
DSRM_MRPL3_like 290..373 CDD:380702 19/93 (20%)
Blue background indicates that the domain is not in the aligned region.

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