DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dcr-1 and MRPL3

DIOPT Version :9

Sequence 1:NP_524453.1 Gene:Dcr-1 / 42693 FlyBaseID:FBgn0039016 Length:2249 Species:Drosophila melanogaster
Sequence 2:NP_013737.1 Gene:MRPL3 / 855039 SGDID:S000004626 Length:390 Species:Saccharomyces cerevisiae


Alignment Length:352 Identity:69/352 - (19%)
Similarity:118/352 - (33%) Gaps:117/352 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   669 RGTVKILNPEVFSKQPPTACDIKLQEIQDEL-----------PAAAQLDTSNSSDEAVSMSNTSP 722
            :.||..:...|.||.|......|..::.:||           |:|...|..|:..:..:..||.|
Yeast    81 KSTVNEIPESVASKSPSLRTLHKRLQLPNELTYSTLSRCLTCPSAKLPDKINNPTKGAAFVNTVP 145

  Fly   723 SE---------------------SSTEQKSRRFQCELSSLTEPEDTSDTTAEIDTAHSLASTTKD 766
            :.                     .|..||..|.               .|..::.|.:...:...
Yeast   146 TNKYLDNHGLNIMGKNLLSYHVTKSIIQKYPRL---------------PTVVLNAAVNAYISEAV 195

  Fly   767 LVHQMAQYREIE---QMLLSKCANTEPPEQEQSEAERFSACLAAYRPKPHLLTGASVDLGSAIAL 828
            |.| :|:|..||   ..:||:....||.|......:.|:..|.: :....|:||.:....||:|:
Yeast   196 LAH-IAKYWGIEVETTSVLSRYLKMEPFEFTLGRLKFFNNSLNS-KDGIELITGKNFSETSALAM 258

  Fly   829 VNKYCARLPSDTFTKLTALWRCTRNERAGVTLFQY------TLRLPINSPLKHDIVGLPMPTQTL 887
                      ...:.:.|:|..| .::....::::      :.:|.|....:.:     .||:.|
Yeast   259 ----------SVRSIIAAIWAVT-EQKDSQAVYRFIDDHIMSRKLDITKMFQFE-----QPTREL 307

  Fly   888 AR--RLAALQACV-----ELHRI------------GELDDQLQPIGKEGF---------RALEP- 923
            |.  |...|:..|     |..|:            ||     :.:| ||:         ||... 
Yeast   308 AMLCRREGLEKPVSKLVAESGRLSKSPVFIVHVFSGE-----ETLG-EGYGSSLKEAKARAATDA 366

  Fly   924 --DWECFELEPEDEQIVQLSDEPRPGT 948
              .|.|:|...:.|.::.      |||
Yeast   367 LMKWYCYEPLAQQEPVID------PGT 387

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dcr-1NP_524453.1 DEAD-like_helicase_N 15..208 CDD:421690
Dicer_PBD 240..344 CDD:277191
DEAD-like_helicase_C 490..614 CDD:365791
Dicer_dimer 825..916 CDD:397444 19/115 (17%)
PAZ_dicer_like 1091..1212 CDD:239209
RIBOc 1724..1930 CDD:238333
RIBOc 2008..2172 CDD:238333
DSRM_DICER 2177..2240 CDD:380680
MRPL3NP_013737.1 Rnc 114..376 CDD:223644 56/300 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0571
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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