DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dcr-1 and RTL1

DIOPT Version :10

Sequence 1:NP_524453.1 Gene:Dcr-1 / 42693 FlyBaseID:FBgn0039016 Length:2249 Species:Drosophila melanogaster
Sequence 2:NP_001328413.1 Gene:RTL1 / 827212 AraportID:AT4G15417 Length:289 Species:Arabidopsis thaliana


Alignment Length:307 Identity:91/307 - (29%)
Similarity:135/307 - (43%) Gaps:66/307 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly  1952 GSTKPNA----ENVVTVYGAWPTPRSPLLHFAPNATEELDQLLSGFEEFEESLGYKFRDRSYLLQ 2012
            ||...||    :|..|:..|.|                 |||:. .|..|:.|.|||:|:|.||:
plant    27 GSQLSNAIDGKDNTKTIGSADP-----------------DQLME-IESLEKILNYKFKDKSLLLK 73

  Fly  2013 AMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSPGALTDLRSALVNNTIFASLAV 2077
            |.|.|||..:: ::.|:.||.|||::|:..|.....:...:.:||.||.||:..|:....|.:||
plant    74 AFTDASYVDDK-SESYELLELLGDSILNMGIIYDFIKLYPKEAPGPLTKLRAVNVDTEKLARVAV 137

  Fly  2078 RHGFHKFFRHLSPGLNDVIDRFVRIQQENGHCISEEYYLLSEEECDDAEDVEVPKALGDVFESIA 2142
            .|..:.:.||..|.|.:.|..||...        |:|.|.|...      ::|||.|.|:.||..
plant   138 NHQLYSYLRHKKPLLEEQILEFVEAM--------EKYPLHSNGL------LKVPKVLADIVESTI 188

  Fly  2143 GAIFLDSNMSLDVVWHVYSNMMSPEIEQFSNSVPKSPIRELLELEPETAKFGKPEKLADGRRVRV 2207
            ||||:|.| |.:.||.|...::.|.|.  .:.:...|:.||.|             :...|.:::
plant   189 GAIFMDCN-STETVWKVIKPLLEPIIH--LDKMKSHPMTELNE-------------MCQKRNLKL 237

  Fly  2208 TV-------DVFC---KGTFRGIGRN---YRIAKCTAAKCALRQLKK 2241
            |.       ..:|   :..|.|.|.:   ...|:..|||.|:....|
plant   238 TSKDTWEENQTYCFHIEDKFVGCGHHPVKKETARNFAAKNAIDNFAK 284

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dcr-1NP_524453.1 DEAD-like_helicase_N 15..208 CDD:475120
Dicer_PBD 240..344 CDD:277191
P-loop containing Nucleoside Triphosphate Hydrolases 490..614 CDD:476819
Dicer_dimer 825..916 CDD:460900
PAZ_dicer_like 1091..1212 CDD:239209
RIBOc 1724..1930 CDD:238333
RIBOc 2008..2172 CDD:238333 57/163 (35%)
DSRM_DICER 2177..2240 CDD:380680 15/75 (20%)
RTL1NP_001328413.1 RIBOc 69..216 CDD:238333 57/164 (35%)
DSRM 222..280 CDD:214634 15/70 (21%)
Blue background indicates that the domain is not in the aligned region.

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