DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dcr-1 and mRpL44

DIOPT Version :10

Sequence 1:NP_524453.1 Gene:Dcr-1 / 42693 FlyBaseID:FBgn0039016 Length:2249 Species:Drosophila melanogaster
Sequence 2:NP_649541.1 Gene:mRpL44 / 40656 FlyBaseID:FBgn0037330 Length:321 Species:Drosophila melanogaster


Alignment Length:319 Identity:68/319 - (21%)
Similarity:123/319 - (38%) Gaps:67/319 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly  1934 VLPITRQLDGGNQEQRIPGSTKPNAENVVTVYGAWPTPRSPLLHFAPNATE--ELDQLLSGFEEF 1996
            |.|..|:|  .:::::: |..||...   :.:..| ..||.|..|.....|  ||.:|...|.  
  Fly    33 VSPTLREL--AHRQKKL-GPQKPERR---SGFVEW-NQRSELFAFGKRLGESFELSELQRAFT-- 88

  Fly  1997 EESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSPGALTD 2061
            |:|...:..||...|.........|:. :|..::.:.:..|.::..:...|.:.|.:    .|..
  Fly    89 EKSFAEREEDRRRQLGIEESDLQMPHN-SDLVEKGQQIARAYVEAFLQHQLPKVPNE----GLQA 148

  Fly  2062 LRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQENGHCISEEYYLLSEEECDDAE 2126
            :.|.|::....|.::.         ||  |..|:|.             |.||...:|.:.    
  Fly   149 IASYLLSTETLAHVST---------HL--GTKDLIQ-------------STEYPPSAESQA---- 185

  Fly  2127 DVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMSPEIEQ---FSNSVPKSPIRELLELEP 2188
                 |:|    .::.||  |.|:..::..:....:.:..::.|   .....|:.|| :|||...
  Fly   186 -----KSL----HAVIGA--LASSSGIERAFIFVRDFICTQLNQKDLLEVWTPQEPI-QLLEKIC 238

  Fly  2189 ETAKFG--KPEKLAD-GRRVRVT---VDVFCKGTF--RGIGRNYRIAKCTAAKCALRQL 2239
            :..|.|  :|..|.| |:...:.   |.::.....  :|.|.:.:.|..|||..||:.:
  Fly   239 QERKLGEAEPRLLGDCGKNTVLAAYQVGIYANRQLLGKGFGEDVKTATETAALDALQSI 297

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dcr-1NP_524453.1 DEAD-like_helicase_N 15..208 CDD:475120
Dicer_PBD 240..344 CDD:277191
P-loop containing Nucleoside Triphosphate Hydrolases 490..614 CDD:476819
Dicer_dimer 825..916 CDD:460900
PAZ_dicer_like 1091..1212 CDD:239209
RIBOc 1724..1930 CDD:238333
RIBOc 2008..2172 CDD:238333 26/166 (16%)
DSRM_DICER 2177..2240 CDD:380680 20/71 (28%)
mRpL44NP_649541.1 RIBOc 81..219 CDD:197778 31/183 (17%)
DSRM_MRPL44 217..300 CDD:380703 22/82 (27%)
Blue background indicates that the domain is not in the aligned region.

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