DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dcr-1 and Mrpl44

DIOPT Version :10

Sequence 1:NP_524453.1 Gene:Dcr-1 / 42693 FlyBaseID:FBgn0039016 Length:2249 Species:Drosophila melanogaster
Sequence 2:NP_001026820.1 Gene:Mrpl44 / 301552 RGDID:1309556 Length:332 Species:Rattus norvegicus


Alignment Length:321 Identity:68/321 - (21%)
Similarity:122/321 - (38%) Gaps:81/321 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly  1971 PRSPLLHFAPNATEELDQLLSGFE---EFEESLGYKFRDRSYLLQA---MTHASYTPNRLTDCYQ 2029
            ||..|...||.....:..:..||.   .|::.|     :|..||::   ....|..||  .|.:.
  Rat    13 PRRLLAPAAPTLVPPVRGVKKGFRAAFRFQKEL-----ERWRLLRSPPPPVRRSEKPN--WDYHA 70

  Fly  2030 RLEFLGDAV-----LDYLITRHL------YEDPRQHSPG-----ALTDLRSALVNNTIF-ASLAV 2077
            .::..|..:     ||.|.|..:      .|:.::.:.|     ||.:|:.   |..:| ..|:.
  Rat    71 EIQAFGSRLQEAFSLDLLKTAFVNSCYIKSEEAKRQNLGIEKEAALLNLKD---NQELFEQGLSF 132

  Fly  2078 RHG-FHKFFRHLSP-----GLNDVIDRFVRIQQENGHCISEEYYLLSEEECDDAEDVEVPK-ALG 2135
            .|. ..:|.....|     |:..::: |:..:....|..|.    |:.|:...:.:..||: .|.
  Rat   133 SHRCLTQFLEDEFPNLPTEGIESLVN-FLTGEAVVCHVASN----LAVEQLTLSAEFPVPQPVLR 192

  Fly  2136 DVFESIAGAI---------------FLDSNMS---LDVVWHVYSNM--MSPEIEQFSNSVPKSPI 2180
            ..|.::.||:               ||.:.|:   |..:|.:.:.|  :..|:::.:.|.|:|.:
  Rat   193 RTFFAVIGALLQSSGPERAALFIRDFLITQMTGKELFEMWTIVNPMGLLVEELKKRNISAPESRL 257

  Fly  2181 RELLELEPETAKFGKPEKLADGRRVRVTVDVFCKGTF--RGIGRNYRIAKCTAAKCALRQL 2239
                     |.:.|....|.     ...|.::|....  .|.|....:|:..||:.|||:|
  Rat   258 ---------TRQSGSTTALP-----LYFVGLYCDKRLIAEGPGETVLVAEEEAARVALRKL 304

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dcr-1NP_524453.1 DEAD-like_helicase_N 15..208 CDD:475120
Dicer_PBD 240..344 CDD:277191
P-loop containing Nucleoside Triphosphate Hydrolases 490..614 CDD:476819
Dicer_dimer 825..916 CDD:460900
PAZ_dicer_like 1091..1212 CDD:239209
RIBOc 1724..1930 CDD:238333
RIBOc 2008..2172 CDD:238333 41/210 (20%)
DSRM_DICER 2177..2240 CDD:380680 15/65 (23%)
Mrpl44NP_001026820.1 DSRM_MRPL44 225..307 CDD:380703 21/94 (22%)
Blue background indicates that the domain is not in the aligned region.

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