DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dcr-1 and fml1

DIOPT Version :9

Sequence 1:NP_524453.1 Gene:Dcr-1 / 42693 FlyBaseID:FBgn0039016 Length:2249 Species:Drosophila melanogaster
Sequence 2:NP_593348.2 Gene:fml1 / 2543668 PomBaseID:SPAC9.05 Length:834 Species:Schizosaccharomyces pombe


Alignment Length:551 Identity:105/551 - (19%)
Similarity:175/551 - (31%) Gaps:181/551 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   498 YCNQNHTARVLFELLAEI-SRRDPDLKFLRCQYTTDRVA---DPTTEPKEAELEHRRQEEVLKRF 558
            |..:..|......:..|| |..:..|:||...|...|.|   ..:...|.|.:..:.|.|.:|:|
pombe   424 YFEKEQTKDTRIMIFVEIRSSAEEILRFLGKFYPNVRPAIFIGQSAVRKAAGMSQKLQNETVKQF 488

  Fly   559 RMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPTTYRSYVQCKGRARAAPAYHVILVAPSYKSPTV 623
            :..:.|.||.||:.|||:|:.:.::::.:|...:....:|..||                     
pombe   489 QKGEVNTLIATSIGEEGLDIGEVDMIICYDASASPIRMLQRMGR--------------------- 532

  Fly   624 GSVQLTDRSHR---YICATGDTTEADSDSDDSAMPNSSGSDPY-----TFGTARG------TVKI 674
                 |.|..:   |:..|....||..:         ...|.|     ...:.||      :.:|
pombe   533 -----TGRKRKGYIYMLLTRGKEEAKWE---------RAKDAYRTLQDNIVSGRGLSLSEKSYRI 583

  Fly   675 LNPEVFSKQPPTACDIKLQEIQDELPAAAQLDTSNSSDEAVSMSNTSPS--ESSTEQKSRRFQCE 737
            | ||.|  :|  .||.::.||..|            ::|.|    .:|.  :..|:.|.:.|.  
pombe   584 L-PEKF--RP--VCDKRVIEIPKE------------NEEVV----VAPKKVQLRTKIKKKFFM-- 625

  Fly   738 LSSLTEPEDTSDTTAEIDTAHSLASTTKDLVHQMAQYREIEQMLLSKCANTEPPEQEQSEAERFS 802
                  ||:..:   ...||.:|....:.|.       :.|:.....|..|...|||:...:...
pombe   626 ------PENALN---GFITASALGKPKRALA-------KSEESPFEICPVTYSIEQEKKLEKYKR 674

  Fly   803 ACLAAYRPKPHLLTGASVDLGSAIALVNKYCARLPSDTFTKLTALWRCTRNERAGVTLFQYTLRL 867
            .|          |.|..:.....::.:: ...|:|....||                        
pombe   675 VC----------LRGLDIHRNRRLSQLS-VTGRIPHSLATK------------------------ 704

  Fly   868 PINSPLKHDIVGLPMPTQTLARRLAALQACVELHRIGELDDQLQPIGKEGFRALEPDWECFELEP 932
            .|:|.|||                           :..:|.|.   .:|..|.:...::...:..
pombe   705 SIHSFLKH---------------------------LNTIDSQK---AQEWRREINNQFQVSNINS 739

  Fly   933 EDEQIVQ--LSD-----EPRPGTTKRRQYYYKRIASEFCDCRPVAGAPCYLYFIQLTLQCPIPE- 989
            .|....|  :.|     .|.|.||.:|:..:...:.:         .....|.....|:..:|: 
pombe   740 TDRDTKQPKMHDFRQPLHPNPMTTLKRKGQHNSFSYD---------KSTLFYDNNNNLEEDLPDV 795

  Fly   990 -----EQNTRGRKIYPPEDAQQGFGILTTKR 1015
                 .:|....|..|.:|.||....|..||
pombe   796 NISISSRNEEASKTKPFDDRQQRLQQLVEKR 826

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dcr-1NP_524453.1 DEAD-like_helicase_N 15..208 CDD:421690
Dicer_PBD 240..344 CDD:277191
DEAD-like_helicase_C 490..614 CDD:365791 30/119 (25%)
Dicer_dimer 825..916 CDD:397444 11/90 (12%)
PAZ_dicer_like 1091..1212 CDD:239209
RIBOc 1724..1930 CDD:238333
RIBOc 2008..2172 CDD:238333
DSRM_DICER 2177..2240 CDD:380680
fml1NP_593348.2 MPH1 58..613 CDD:224036 54/244 (22%)
DEXDc 87..230 CDD:238005
FANCM_ID 280..396 CDD:277190
HELICc 412..544 CDD:238034 33/145 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R301
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.030

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