DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dcr-1 and pac1

DIOPT Version :10

Sequence 1:NP_524453.1 Gene:Dcr-1 / 42693 FlyBaseID:FBgn0039016 Length:2249 Species:Drosophila melanogaster
Sequence 2:NP_595292.1 Gene:pac1 / 2540084 PomBaseID:SPBC119.11C Length:363 Species:Schizosaccharomyces pombe


Alignment Length:320 Identity:79/320 - (24%)
Similarity:122/320 - (38%) Gaps:66/320 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly  1950 IPGSTKPNAENVVTVYGA------WPTPRSPLLHFAPNATEELDQLLSGFEEFEES--------- 1999
            |||||..:.|.|..:..:      .|....|..|......:|.::..|  |||||.         
pombe    75 IPGSTWSHIEGVYEMLKSRHDRQNEPVIEEPSSHPKNQKNQENNEPTS--EEFEEGEYPPPLPPL 137

  Fly  2000 LGYKFRDRSYLLQAMTHASY----TPNRLTDCY-QRLEFLGDAVLDYLITRHLYEDPRQHSPGAL 2059
            ...|.:::.::..:..:..|    .||.|.|.: :|||||||:..:...||.::....|...|:|
pombe   138 RSEKLKEQVFMHISRAYEIYPNQSNPNELLDIHNERLEFLGDSFFNLFTTRIIFSKFPQMDEGSL 202

  Fly  2060 TDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQENGHCISEEYYLLSEEECDD 2124
            :.||:..|.                        |:..|:|.|:     :...:...|....|.|.
pombe   203 SKLRAKFVG------------------------NESADKFARL-----YGFDKTLVLSYSAEKDQ 238

  Fly  2125 AEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMSPEIEQFSNSVPKSPIRELL--ELE 2187
            ....:  |.:.|.||:..||:.||........|  .|.::.|:|   :|...:.||.:|.  :|.
pombe   239 LRKSQ--KVIADTFEAYLGALILDGQEETAFQW--VSRLLQPKI---ANITVQRPIDKLAKSKLF 296

  Fly  2188 PETAKFGKPE-KLADG----RRVRVTVDVF-CKGTFRGIGRNYRIAKCTAAKCALRQLKK 2241
            .:.:..|..| :..||    ....|...:| .|...|..|.|.:.|...||..||..|.|
pombe   297 HKYSTLGHIEYRWVDGAGGSAEGYVIACIFNGKEVARAWGANQKDAGSRAAMQALEVLAK 356

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dcr-1NP_524453.1 DEAD-like_helicase_N 15..208 CDD:475120
Dicer_PBD 240..344 CDD:277191
P-loop containing Nucleoside Triphosphate Hydrolases 490..614 CDD:476819
Dicer_dimer 825..916 CDD:460900
PAZ_dicer_like 1091..1212 CDD:239209
RIBOc 1724..1930 CDD:238333
RIBOc 2008..2172 CDD:238333 39/168 (23%)
DSRM_DICER 2177..2240 CDD:380680 19/70 (27%)
pac1NP_595292.1 RIBOc 141..282 CDD:238333 41/176 (23%)
DSRM_RNT1p-like 288..355 CDD:380705 17/66 (26%)
Blue background indicates that the domain is not in the aligned region.

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