Sequence 1: | NP_524453.1 | Gene: | Dcr-1 / 42693 | FlyBaseID: | FBgn0039016 | Length: | 2249 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_588215.2 | Gene: | dcr1 / 2538930 | PomBaseID: | SPCC188.13c | Length: | 1374 | Species: | Schizosaccharomyces pombe |
Alignment Length: | 2296 | Identity: | 373/2296 - (16%) |
---|---|---|---|
Similarity: | 630/2296 - (27%) | Gaps: | 1086/2296 - (47%) |
- Green bases have known domain annotations that are detailed below.
Fly 18 RDFQVELLATAYERNTIICLGHRSSKEFIALKLLQE-------LSRRARRHGRVSVY-------- 67
Fly 68 ----------LSCEVGTSTEPCSIYTMLTHLTDLRVWQEQPDMQIPFDHCWTDYHVSILRPEGFL 122
Fly 123 YLLETRELLLSSVELIVLEDCHDSA---VYQRIRPLFENH---IMPAPPADRPRILGLAGPLHSA 181
Fly 182 GCELQQLSAMLATLEQSVLCQIETASDIVTVLRYCSRPHEYIVQCAPFEMDELSLVLADVLNTHK 246
Fly 247 SFLLDHRYDPYEIYGTDQFMDELKDIPDPKVDPLNVINSLLVVLHEMGPWCTQRAAHHFYQCNEK 311
Fly 312 LKVKTPHERHYLLYCLVSTALIQLYSLCEHAFHRHLGSGSDSRQTIERYSSPKVRRLLQTLRCFK 376
Fly 377 PEEVHTQADGLRRMRHQVDQADFNRLSHTLESK--------CRMVDQMDQPPTETRAL------- 426
Fly 427 -VATLEQILHTTEDRQTNR---SAARVTPTPTPAHAKPKPSSGANTAQPRTRRRVYTRRHHRDHN 487
Fly 488 DGSDTLCALIYCNQNHTARVLFELLAEISRRDPDLKFLRCQYTTDRVADPTTEPKEAELEHRRQE 552
Fly 553 EVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPTTYRSYVQCKGRARAAPAYHVILVAPS 617
Fly 618 YKSPTVGSVQLTDRSHRYICATGDTTEADSDSDDSAMPNSSGSDPYTFGTARGTVKILNPEVFSK 682
Fly 683 QPPTACDIKLQEIQDELPAAAQLDTSNSSDEAVSMSNTSPSESSTEQKSRRFQCELSSLTEPEDT 747
Fly 748 SDTTAEIDTAHSLASTTKDLVHQMAQYREIEQMLLSKCANTEPPEQEQSEAERFSACLAAYRPKP 812
Fly 813 HLLTGASVDLGSAIALVNKYCARLPSDTFTK----LTAL-----WRCTRNERAGVTLFQYTLRLP 868
Fly 869 INSPLKHDIVGLPMPTQTLARRLAALQACVELHRIGELDDQLQPIGKEGFRALEPDWECFELEPE 933
Fly 934 DEQIVQLSDEPRPGTTKRRQYY----YKRIASEFCDCRPVAGAPCYLYFIQLTLQCPIPEEQNTR 994
Fly 995 GRKIYPPEDAQQGFGILTTKRIPKLSAFSIFTRSG-EVKVSLELAKERVILTSEQIVCINGFLNY 1058
Fly 1059 TFTNVLRLQKFLMLFDPDSTENCVFIVPTVKAPAGGKHIDWQFLELIQANGNTMPRAVPDEERQA 1123
Fly 1124 QPFDPQRFQDAVVMPWYRNQDQPQYFYVAEICPHLSPLSCFPGDNYRTFKHYYLVKYGLTIQNTS 1188
Fly 1189 QPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQILVPELCTVHPFPASLWR 1253
Fly 1254 TAVCLPCILYR-INGLLLADDIRKQVSADLGLGRQQIEDEDFEWPMLDFGWSLSEVLKKSRESKQ 1317
Fly 1318 KESLKDDTINGKDLADVEKKPTSEETQLDKDSKDDKVEKSAIELIIEGEEKLQEADDFIEIGTWS 1382
Fly 1383 NDMADDIASFNQEDDDEDDAFHLPVLPANVKFCDQQTRYGSPTFWDVSNGESGFKGPKSSQNKQG 1447
Fly 1448 GKGKAKGPAKPTFNYYDSDNSLGSSYDDDDNAGPLNYMHHNYSSDDDDVADDIDAGRIAFTSKNE 1512
Fly 1513 AETIETAQEVEKRQKQLSIIQATNANERQYQQTKNLLIGFNFKHEDQKEPATIRYEESIAKLKTE 1577
Fly 1578 IESGGMLVPHDQQLVLKRSDAAEAQVAKVSMMELLKQLLPYVNEDVLAKKLGDRRELLLSDLVEL 1642
Fly 1643 NADWVARHEQETYNVMGCGDSFDNYNDHHRLNLDEKQLKLQYERIEIEPPTSTKAITSAILPAGF 1707
Fly 1708 SFDRQPDLVGHPGPSPSIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYITYENVHEGKL 1772
Fly 1773 SHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELEKALIEAKIPTHHWKLA 1837
Fly 1838 DLLDIKNLSSVQICEMVREKADALGLEQNGGAQNGQLDDSNDSCNDFSCFIPYNLVSQHSIPDKS 1902
Fly 1903 IADCVEALIGAYLIECGPRGALLFMAWLGVRVLPITRQLDGGNQEQRIPGSTKPNAENVVTVYGA 1967
Fly 1968 WPTPRSPLLHFAPNATEELDQLLSGFEEFEESLGYKFRDRSYLLQAMTHASYTPNR-LTDCYQRL 2031
Fly 2032 EFLGDAVLDYLITRHLYEDPRQHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVI 2096
Fly 2097 DRFVRIQQENGHCISEEYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSL-------- 2153
Fly 2154 ----------------DVVWHVYSNMMSPEIEQFSNSV----PKSPIRELLELEPETAK------ 2192
Fly 2193 --------FGKPEKLADGRRV 2205 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Dcr-1 | NP_524453.1 | DEAD-like_helicase_N | 15..208 | CDD:421690 | 38/220 (17%) |
Dicer_PBD | 240..344 | CDD:277191 | 14/103 (14%) | ||
DEAD-like_helicase_C | 490..614 | CDD:365791 | 41/123 (33%) | ||
Dicer_dimer | 825..916 | CDD:397444 | 25/99 (25%) | ||
PAZ_dicer_like | 1091..1212 | CDD:239209 | 9/120 (8%) | ||
RIBOc | 1724..1930 | CDD:238333 | 42/205 (20%) | ||
RIBOc | 2008..2172 | CDD:238333 | 52/188 (28%) | ||
DSRM_DICER | 2177..2240 | CDD:380680 | 10/43 (23%) | ||
dcr1 | NP_588215.2 | MPH1 | 1..501 | CDD:224036 | 122/737 (17%) |
DEXDc | 26..188 | CDD:238005 | 36/227 (16%) | ||
Helicase_C | 343..464 | CDD:278689 | 38/142 (27%) | ||
Dicer_dimer | 538..620 | CDD:281376 | 23/94 (24%) | ||
RIBOc | 912..1045 | CDD:197778 | 49/233 (21%) | ||
Rnc | 1076..1345 | CDD:223644 | 71/290 (24%) | ||
RIBOc | 1098..1247 | CDD:238333 | 48/156 (31%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Domainoid | 1 | 1.000 | 67 | 1.000 | Domainoid score | I2756 |
eggNOG | 1 | 0.900 | - | - | E1_COG0571 | |
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 1 | 1.000 | - | - | H13251 | |
Inparanoid | 1 | 1.050 | 299 | 1.000 | Inparanoid score | I607 |
OMA | 1 | 1.010 | - | - | QHG57860 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0002051 | |
OrthoInspector | 1 | 1.000 | - | - | otm47000 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_101152 | |
Panther | 1 | 1.100 | - | - | LDO | PTHR14950 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R301 |
SonicParanoid | 1 | 1.000 | - | - | X1728 | |
TreeFam | 1 | 0.960 | - | - | ||
14 | 13.860 |