DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dcr-1 and mRpL44

DIOPT Version :10

Sequence 1:NP_524453.1 Gene:Dcr-1 / 42693 FlyBaseID:FBgn0039016 Length:2249 Species:Drosophila melanogaster
Sequence 2:XP_321167.5 Gene:mRpL44 / 1281227 VectorBaseID:AGAMI1_006950 Length:329 Species:Anopheles gambiae


Alignment Length:334 Identity:67/334 - (20%)
Similarity:109/334 - (32%) Gaps:97/334 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly  1934 VLPITRQLDGGNQEQRIPGSTKPNAENVVTVYGAWPTPRSPLLHFAPNATEELDQLLSGFEEFEE 1998
            |.|..|:| ...:|:..|.:..|.:.:....|.|                    ::.:..:..:|
Mosquito    29 VAPTLREL-RRRREKMGPEAALPRSSHSDWNYSA--------------------EIFAFGKRLQE 72

  Fly  1999 SLGYKFRDRSYLLQAMTHASYTPNRLTD-------------------CYQRLEFLGDAVLDYLIT 2044
            |.     |.:.|.||.||.|:.......                   ..|..:.:.:.|..:|:|
Mosquito    73 SF-----DANVLQQAFTHQSFIEQETRKQAAVGIEQPVLGVHDNRELIAQGEQLVAEYVEAFLLT 132

  Fly  2045 RHLYEDPRQHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQENGHC 2109
            . |...|||.    :..:|.||.:....|.::.         ||  |..|:|             
Mosquito   133 A-LPRLPRQF----IASVREALTSEAQLAHVSA---------HL--GTKDII------------- 168

  Fly  2110 ISEEYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMSPEIEQFSNS 2174
                  :.:|...|||......||:....:..:|    |....|.|...:...:...::.::...
Mosquito   169 ------MAAEFPIDDALLASTLKAIVAALQRSSG----DERCFLFVRDFLCGQLNQRDLYEYLEI 223

  Fly  2175 VPKSPIRELLE-------LEPETAKFGKPEK--LADGRRVRVTVDVFCKGTFRGIGRNYRIAKCT 2230
            .  .|:|.|.|       .:||....|...:  |....:|.:..|....||  |.|.|..:|...
Mosquito   224 A--DPLRTLQEYCKERGLADPEPRLIGNVGRNTLLAAHQVGIYSDRKLLGT--GYGENQTVAVEE 284

  Fly  2231 AAKCALRQL 2239
            ||:..||||
Mosquito   285 AARDCLRQL 293

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dcr-1NP_524453.1 DEAD-like_helicase_N 15..208 CDD:475120
Dicer_PBD 240..344 CDD:277191
P-loop containing Nucleoside Triphosphate Hydrolases 490..614 CDD:476819
Dicer_dimer 825..916 CDD:460900
PAZ_dicer_like 1091..1212 CDD:239209
RIBOc 1724..1930 CDD:238333
RIBOc 2008..2172 CDD:238333 33/182 (18%)
DSRM_DICER 2177..2240 CDD:380680 22/72 (31%)
mRpL44XP_321167.5 None
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.