DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG45049 and lim2.1

DIOPT Version :9

Sequence 1:NP_001287471.1 Gene:CG45049 / 42691 FlyBaseID:FBgn0266409 Length:273 Species:Drosophila melanogaster
Sequence 2:NP_001018392.1 Gene:lim2.1 / 573354 ZFINID:ZDB-GENE-050522-398 Length:173 Species:Danio rerio


Alignment Length:170 Identity:38/170 - (22%)
Similarity:75/170 - (44%) Gaps:32/170 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    93 CGVIVVALMIMALASTDWLM---ASDW-RQGLFVHCIEDDSVPPLPFNIQDPPGCY-WTRDVGYI 152
            |..:...|:|::.|:..|:.   :::: .|||:.:|              .|..|: .|..:.|.
Zfish    11 CAGVGNILLIVSTATDYWMQYRHSNNYMHQGLWRYC--------------TPGKCFTHTDSIAYW 61

  Fly   153 KATAALCIITLITDVIATVLTGLGLRTQNHNLKY-KFYR--IAVLVMLVSLLAVLSALIVY---P 211
            .||.|..|::|:...|..:   :|:....|...: :|.:  .|.::..:|...|..|:.||   .
Zfish    62 DATRAFMILSLLACFIGII---IGIMAFIHYSSFDRFDKTFAAGILFFISCFFVFLAMAVYTGVT 123

  Fly   212 VCFAGELTMANRRVWEFGWAYGVGWGAAIFLFGAVVLLLC 251
            :.:.|: ...|   |.|.|:|.:||.:.:..|.:.:..:|
Zfish   124 INYYGK-RYGN---WRFSWSYIIGWVSVVLTFFSGMFYMC 159

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG45049NP_001287471.1 PMP22_Claudin <150..249 CDD:304458 25/104 (24%)
lim2.1NP_001018392.1 PMP22_Claudin 1..157 CDD:304458 37/166 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1307601at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.010

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