DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG45049 and LIM2

DIOPT Version :9

Sequence 1:NP_001287471.1 Gene:CG45049 / 42691 FlyBaseID:FBgn0266409 Length:273 Species:Drosophila melanogaster
Sequence 2:NP_085915.2 Gene:LIM2 / 3982 HGNCID:6610 Length:215 Species:Homo sapiens


Alignment Length:207 Identity:52/207 - (25%)
Similarity:82/207 - (39%) Gaps:64/207 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    93 CGVIVVALMIMALASTDW----LMASDWRQGLFVHC------IEDDSV--PPLPFNIQDPPGCYW 145
            |..:...|:::|:|:..|    |..|...|||:.:|      ::.||:  ||     ...||..|
Human    11 CAWVGTILLVVAMATDHWMQYRLSGSFAHQGLWRYCLGNKCYLQTDSIGEPP-----GQGPGRAW 70

  Fly   146 TR---DVG-----------------------YIKATAALCIITLITDVIATVLTGLGLRTQNHNL 184
            .:   |:|                       |..||.|..|::.:..:...:   :|:....|  
Human    71 GKSRADLGAQGHLYSRWRTLRLKEGKGATQAYWNATRAFMILSALCAISGII---MGIMAFAH-- 130

  Fly   185 KYKFYRI-----AVLVMLVSLLAVLSALIVY---PVCFAGELTMANRRV--WEFGWAYGVGWGAA 239
            :..|.||     |.::...|.|.|:.||.:|   .|.|.|      ||.  |.|.|:|.:||.|.
Human   131 QPTFSRISRPFSAGIMFFSSTLFVVLALAIYTGVTVSFLG------RRFGDWRFSWSYILGWVAV 189

  Fly   240 IFLFGAVVLLLC 251
            :..|.|.:..:|
Human   190 LMTFFAGIFYMC 201

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG45049NP_001287471.1 PMP22_Claudin <150..249 CDD:304458 32/131 (24%)
LIM2NP_085915.2 PMP22_Claudin 1..199 CDD:328820 51/203 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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