DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG45049 and Lim2

DIOPT Version :9

Sequence 1:NP_001287471.1 Gene:CG45049 / 42691 FlyBaseID:FBgn0266409 Length:273 Species:Drosophila melanogaster
Sequence 2:NP_446223.1 Gene:Lim2 / 114903 RGDID:621482 Length:173 Species:Rattus norvegicus


Alignment Length:174 Identity:45/174 - (25%)
Similarity:71/174 - (40%) Gaps:40/174 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    93 CGVIVVALMIMALASTDW----LMASDWRQGLFVHCIEDDSVPPLPFNIQDPPGCY-WTRDVGYI 152
            |..:...|:::|.|:..|    |..|...|||:.:|:.:.              |: .|..:.|.
  Rat    11 CAWVGTILLVVATATDHWMQYRLSGSFAHQGLWRYCLGNK--------------CFLQTESIAYW 61

  Fly   153 KATAALCIITLITDVIATVLTGLGLRTQNHNLKYKFYRI-----AVLVMLVSLLAVLSALIVY-- 210
            .||.|..|::.:......::..|....|:     .|.|:     |.::...|.|.||.||.:|  
  Rat    62 NATRAFMILSALCATSGIIMGVLAFAQQS-----TFTRLSRPFSAGIMFFASTLFVLLALAIYTG 121

  Fly   211 -PVCFAGELTMANRRV--WEFGWAYGVGWGAAIFLFGAVVLLLC 251
             .|.|.|      ||.  |.|.|:|.:||.|.:..|.|.:..:|
  Rat   122 VTVSFLG------RRFGDWRFSWSYILGWVALLMTFFAGIFYMC 159

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG45049NP_001287471.1 PMP22_Claudin <150..249 CDD:304458 31/108 (29%)
Lim2NP_446223.1 PMP22_Claudin 1..157 CDD:395662 44/170 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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