DRSC/TRiP Functional Genomics Resources

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Protein Alignment cd and Tpo

DIOPT Version :9

Sequence 1:NP_651081.1 Gene:cd / 42681 FlyBaseID:FBgn0263986 Length:830 Species:Drosophila melanogaster
Sequence 2:NP_062226.2 Gene:Tpo / 54314 RGDID:3900 Length:914 Species:Rattus norvegicus


Alignment Length:622 Identity:213/622 - (34%)
Similarity:320/622 - (51%) Gaps:80/622 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   217 RYRRSTGVCNNKQHPRTYGASMVPYRRMVSPDYADGIAAPR-----VSHHG-RLPPARQVS---L 272
            :||..||||||:.||| :|||.....|.:.|.|.||.:.||     ..:|| .|||.|:|:   :
  Rat   144 KYRPITGVCNNRDHPR-WGASNTALARWLPPVYEDGFSQPRGWNPNFLYHGFPLPPVREVTRHLI 207

  Fly   273 KIHRSSYETDSNFTVMLAVFGQFMDHDITATSLTTSQEG--ESIDCCVAATREQHPECYPVDILP 335
            ::...:...|..::..|.|:||::||||..|..:||...  ..:||  ..|.|....|:|:.:  
  Rat   208 QVSNEAVTEDDQYSDFLPVWGQYIDHDIALTPQSTSTAAFWGGVDC--QLTCENQNPCFPIQL-- 268

  Fly   336 DDPYYKQYNISCMNFVRSAPA-PTGRFG----------PRMQLNQATAFIDASVVYGNLEQRQNQ 389
              |.......:|:.|.||:.| .||..|          ||.|:|..|:|:|||.|||:....:.|
  Rat   269 --PSNSSRTTACLPFYRSSAACGTGDQGALFGNLSAANPRQQMNGLTSFLDASTVYGSSPGVEKQ 331

  Fly   390 LRSFIN--GSLRM--FVTDDGRQLLPISS---NPADGCNRVQMTRLGKYCFESGDDRANENLLLT 447
            ||::.:  |.||:  ...|.||..||.:|   .|..|......|.    ||.:||.||:|...|.
  Rat   332 LRNWSSSAGLLRVNTLHLDSGRAYLPFASAACAPEPGAPHANRTP----CFLAGDGRASEVPALA 392

  Fly   448 SMHLLWARHHNYLARQLQEQNPHWEDERLYQEARKILGAQMAHITYNEFLPVLLGKNISEAKGLL 512
            ::|.||.|.||.||...:..|.||.....||||||::||....||..:::|.:||.:        
  Rat   393 AVHTLWLREHNRLATAFKAINTHWSANTAYQEARKVVGALHQIITMRDYIPKILGPD-------- 449

  Fly   513 PAKHNLNAPDTYDPEVDPSIANCFAAAAFRFAH-TLLPGLFNIS---RDNSTPEAIELHKMLFNP 573
            ..:..:...:.|:|.|:|:::|.|:.|||||.| |:.|.:..::   :|::....::||.:.|.|
  Rat   450 AFRQYVGPYEGYNPTVNPTVSNVFSTAAFRFGHATVHPLVRRLNTDFQDHTELPRLQLHDVFFRP 514

  Fly   574 FSLWAEHGIDHALMTAANTPV-MQV-DRFFSLEVTQKLF----EGTAEDRVPLCGLDLVSLNIQR 632
            :.|..|.|:|..:......|. :|| ::..:.|:|::||    .||         |||.|||:||
  Rat   515 WRLIQEGGLDPIVRGLLARPAKLQVQEQLMNEELTERLFVLSNVGT---------LDLASLNLQR 570

  Fly   633 GRDHGIPSYPVFRRHCRLPTVDTWEEMSQAIDNATL-DSIRQIYESPQDVDVYTGALSEPPLDGA 696
            |||||:|.|..:|..|.|..::|..|:::||.|.:: :.|.::|:...::||:.|.|:|..|.||
  Rat   571 GRDHGLPGYNEWREFCGLSRLETPAELNKAIANRSMVNKIMELYKHADNIDVWLGGLAEKFLPGA 635

  Fly   697 IFGPLLSCMVSDQFLRLKLGDSHWYERKMGPQKFTKAQLAEIYKTSLAAIICRNSDGITRVREHV 761
            ..|||.:|::..|...|:.||..|:|..   ..||.||..|:.|.||..:||.|: |:|||   .
  Rat   636 RTGPLFACIIGKQMKALRDGDRFWWENS---HVFTDAQRQELEKHSLPRVICDNT-GLTRV---P 693

  Fly   762 MQRLRDGGNPH--VDCQDLEGFHFNFEPWSEKQQPQD 796
            :...|.|..|.  ..|:::.......  |.| ..|||
  Rat   694 VDAFRIGKFPQDFESCEEIPSMDLRL--WRE-TFPQD 727

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cdNP_651081.1 An_peroxidase 218..755 CDD:281139 201/576 (35%)
peroxinectin_like 364..750 CDD:188655 143/403 (35%)
TpoNP_062226.2 An_peroxidase 145..687 CDD:281139 199/572 (35%)
thyroid_peroxidase 161..722 CDD:188657 198/596 (33%)
CCP 730..783 CDD:153056
EGF_CA 784..826 CDD:284955
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 882..907
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2408
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 311 1.000 Inparanoid score I2513
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D276568at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.870

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