DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cd and Lar

DIOPT Version :9

Sequence 1:NP_651081.1 Gene:cd / 42681 FlyBaseID:FBgn0263986 Length:830 Species:Drosophila melanogaster
Sequence 2:NP_001260594.1 Gene:Lar / 35259 FlyBaseID:FBgn0000464 Length:2032 Species:Drosophila melanogaster


Alignment Length:964 Identity:169/964 - (17%)
Similarity:266/964 - (27%) Gaps:425/964 - (44%)


- Green bases have known domain annotations that are detailed below.


  Fly    80 PSFFFVVNGSD---------------------------------------SELAPNRPLPDEP-- 103
            |.|:.||||.:                                       .:|.|.|..|:.|  
  Fly  1217 PDFYGVVNGEEILVILPQASEEYGPISHYYLVVVPEDKSNLHKIPDQFLTDDLLPGRNKPERPNA 1281

  Fly   104 ---AAEWALQQAALGHHDGAQAVSAGIKALGDREILEEGLQPNEVNTPSFRHYRSLSTNPEARKL 165
               ||::..:......|.|:          ||                   .|.:. ||   |||
  Fly  1282 PYIAAKFPQRSIPFTFHLGS----------GD-------------------DYHNF-TN---RKL 1313

  Fly   166 AR--RGYVENQATIDIAKRFNYTKQPGRSNIGWGPKIVLPDPTVLRLECDFNARYRRSTGVCNNK 228
            .|  |..:..:|.:|..::..||..|...              .|.|:.               :
  Fly  1314 EREKRYRIFVRAVVDTPQKHLYTSSPFSE--------------FLSLDM---------------R 1349

  Fly   229 QHPRTYGASMVPYRRMVSPDYADGIAAPRVSHHGRLPPARQVSLKIHRSSYETDSNFTVMLAVFG 293
            :.|        |..|...|| .:..|.|.||              ::|:..|.:..:.|:..:..
  Fly  1350 EAP--------PGERPHRPD-PNWPAEPEVS--------------VNRNKDEPEILWVVLPLMVS 1391

  Fly   294 QFMDHDITATSLTTSQEGESIDCCVAATREQHPECYPVD----------------ILPDDPY-YK 341
            .|    |.:|:|        |..||...|.|  .|...|                ..|.||. .:
  Fly  1392 TF----IVSTAL--------IVLCVVKRRRQ--PCKTPDQAAVTRPLMAADLGAGPTPSDPVDMR 1442

  Fly   342 QYNISCMNFVRSAPAPTGRFG---PRMQLNQATAFID--ASVVYG--------NLEQRQNQLRSF 393
            :.|......:...|.|...|.   .|::.|....|..  .|:..|        |||..:::    
  Fly  1443 RLNFQTPGMISHPPIPISEFANHIERLKSNDNQKFSQEYESIEPGQQFTWDNSNLEHNKSK---- 1503

  Fly   394 INGSLRMFVTDDGRQLLP----------ISSNPADGCNRVQMTRLGKYCFESGDDRANENLLLTS 448
             |....:...|..|..||          |::|..||                             
  Fly  1504 -NRYANVTAYDHSRVQLPAVEGVVGSDYINANYCDG----------------------------- 1538

  Fly   449 MHLLWARHHNYLARQ--LQEQ-----NPHWEDE--------RLYQEARKILGAQMAHITYNEFLP 498
                :.:|:.|:|.|  |||.     ...||.:        ||.:..|         |..:::.|
  Fly  1539 ----YRKHNAYVATQGPLQETFVDFWRMCWELKTATIVMMTRLEERTR---------IKCDQYWP 1590

  Fly   499 VLLGKNISEAKGLLPAKHNLNAPDTYDPEVDPSIANCFAAAAFRFAHTLLPGLFNISRD--NSTP 561
            .                   ...:||. ::..:|......|.:...      .|.:.|.  |...
  Fly  1591 T-------------------RGTETYG-QIFVTITETQELATYSIR------TFQLCRQGFNDRR 1629

  Fly   562 EAIELHKMLFNPFSLWAEHGI-DH------------ALMTAANTPVM-----QVDRFFSLEVTQK 608
            |..:|.      |:.|.:||: ||            ||....:.||:     .|.|.....|...
  Fly  1630 EIKQLQ------FTAWPDHGVPDHPAPFLQFLRRCRALTPPESGPVIVHCSAGVGRTGCYIVIDS 1688

  Fly   609 LFEGTAEDRVPLCGLDL----VSLNIQRG-----RDH--------------GIPSYPVFRRHCRL 650
            :.|....:::    :|:    ..|..||.     .|.              |:...|....|..|
  Fly  1689 MLERMKHEKI----IDIYGHVTCLRAQRNYMVQTEDQYIFIHDAILEAIICGVTEVPARNLHTHL 1749

  Fly   651 ---------PTVDTWEEMSQAIDNATLDSIRQI------------------YESPQDVDVY---- 684
                     .|:...|...:.:.|..:||.:.:                  |||.:   ||    
  Fly  1750 QKLLITEPGETISGMEVEFKKLSNVKMDSSKFVTANLPCNKHKNRLVHILPYESSR---VYLTPI 1811

  Fly   685 -----TGALSEPPLDG--------AIFGPLLSCMVSDQFLRL-------------KLGD------ 717
                 :..::...:||        |..||:..  .::.|.|:             ||.:      
  Fly  1812 HGIEGSDYVNASFIDGYRYRSAYIAAQGPVQD--AAEDFWRMLWEHNSTIVVMLTKLKEMGREKC 1874

  Fly   718 -SHW-YERKMGPQKFTKAQLAEI----YKTSLAAIICRNSDGITRVREHVMQRLRDGGNPHVDCQ 776
             .:| :||.:..|.:....:||.    ||                :||..:...|||.:..|.  
  Fly  1875 FQYWPHERSVRYQYYVVDPIAEYNMPQYK----------------LREFKVTDARDGSSRTVR-- 1921

  Fly   777 DLEGFHFNFEPWSEKQQPQDLHSAGISRGSTSVRVMSKANHQAHNVTLHIDKGI 830
                 .|.|..|.|:..|:.  ..|.......|....:...|...:|:|...|:
  Fly  1922 -----QFQFIDWPEQGVPKS--GEGFIDFIGQVHKTKEQFGQDGPITVHCSAGV 1968

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cdNP_651081.1 An_peroxidase 218..755 CDD:281139 120/703 (17%)
peroxinectin_like 364..750 CDD:188655 90/532 (17%)
LarNP_001260594.1 Ig 35..129 CDD:299845
I-set 36..129 CDD:254352
IG_like 146..227 CDD:214653
Ig 159..228 CDD:299845
I-set 234..318 CDD:254352
Ig3_RPTP_IIa_LAR_like 249..317 CDD:143216
fn3 324..404 CDD:278470
FN3 423..514 CDD:238020
FN3 520..610 CDD:238020
FN3 616..707 CDD:238020
FN3 712..810 CDD:238020
FN3 832..907 CDD:238020
FN3 914..1005 CDD:238020
FN3 1012..1101 CDD:238020
fn3 1106..1198 CDD:278470
PTPc 1476..1731 CDD:214550 57/337 (17%)
PTPc 1503..1731 CDD:238006 51/310 (16%)
PTPc 1763..2022 CDD:214550 43/236 (18%)
PTPc 1791..2022 CDD:238006 39/208 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2408
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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