DRSC/TRiP Functional Genomics Resources

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Protein Alignment cd and Ptgs2

DIOPT Version :10

Sequence 1:NP_651081.1 Gene:cd / 42681 FlyBaseID:FBgn0263986 Length:830 Species:Drosophila melanogaster
Sequence 2:NP_058928.3 Gene:Ptgs2 / 29527 RGDID:620349 Length:604 Species:Rattus norvegicus


Alignment Length:573 Identity:120/573 - (20%)
Similarity:199/573 - (34%) Gaps:157/573 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   224 VCNNKQH----PRTYGA----------SMVPYRRMVSPDYADGIAAPR-VSHHGRLPPARQVSLK 273
            |..::.|    |.||..          |.:.|.....|..||....|. |..:..||.:::|..|
  Rat   102 VLTSRSHLIDSPPTYNVHYGYKSWEAFSNLSYYTRALPPVADDCPTPMGVKGNKELPDSKEVLEK 166

  Fly   274 I-HRSSYETDSNFT-VMLAVFGQFMDHDITATSLTTSQEGESIDCCVAATREQHPECYPVDILPD 336
            : .|..:..|...| :|.|.|.|...|....|.                                
  Rat   167 VLLRREFIPDPQGTNMMFAFFAQHFTHQFFKTD-------------------------------- 199

  Fly   337 DPYYKQYNISCMNFVRSAPAPTGRFGPRMQLNQATAFIDASVVYGNLEQRQNQLRSFINGSLRMF 401
                          .:..|..|...|..:.||.         |||....||::||.|.:|.|:..
  Rat   200 --------------QKRGPGFTRGLGHGVDLNH---------VYGETLDRQHKLRLFQDGKLKYQ 241

  Fly   402 VTDDGRQLLPISSNPADGCNRVQMT-----------RLGKYCFESGDDRANENLL--LTSMHLLW 453
            |.  |.::.|    |.....:|.|.           .:|:..|         .|:  |.....:|
  Rat   242 VI--GGEVYP----PTVKDTQVDMIYPPHVPEHLRFAVGQEVF---------GLVPGLMMYATIW 291

  Fly   454 ARHHNYLARQLQEQNPHWEDERLYQEARKILGAQMAHITYNEFLPVLLGKNISEAKGLLPAKHNL 518
            .|.||.:...|::::|.|:||||:|.:|.||..:...|...:::..|.|.:...           
  Rat   292 LREHNRVCDILKQEHPEWDDERLFQTSRLILIGETIKIVIEDYVQHLSGYHFKL----------- 345

  Fly   519 NAPDTYDPEV--------DPSIANCFAAAAFRFAHTLLPGLFNISRDNSTPEAIELHKMLFNPFS 575
                .:|||:        ...||:.|  ......|.|||..|||.....|     ..:.|:|. |
  Rat   346 ----KFDPELLFNQQFQYQNRIASEF--NTLYHWHPLLPDTFNIEDQEYT-----FKQFLYNN-S 398

  Fly   576 LWAEHGIDHALMTAANTPVMQVDRFFSLEVTQKLFEGTAEDRVPLCGLDLVSLNIQRGRDHGIPS 640
            :..|||:.|.:.:            |:.::..::..|.   .||:....:...:|.:.|:....|
  Rat   399 ILLEHGLAHFVES------------FTRQIAGRVAGGR---NVPIAVQAVAKASIDQSREMKYQS 448

  Fly   641 YPVFRRHCRLPTVDTWEEMSQAIDNATLDSIRQIYESPQDVDVYTGALSEPPLDGAIFGPLLSCM 705
            ...:|:...|....::||::...:.|.  .::.:|.....:::|...|.|.|...||||..:..:
  Rat   449 LNEYRKRFSLKPYTSFEELTGEKEMAA--ELKALYHDIDAMELYPALLVEKPRPDAIFGETMVEL 511

  Fly   706 VSDQFLRLKLGD-----SHWYERKMGPQKFTKAQLAEIYKTSLAAIICRNSDG 753
            .:...|:..:|:     .:|.....|.:    .....|...|:.::||.|..|
  Rat   512 GAPFSLKGLMGNPICSPQYWKPSTFGGE----VGFRIINTASIQSLICNNVKG 560

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cdNP_651081.1 An_peroxidase 218..762 CDD:460804 120/573 (21%)
Ptgs2NP_058928.3 EGF 21..53 CDD:394967
prostaglandin_endoperoxide_synthase 75..562 CDD:188648 120/573 (21%)
Blue background indicates that the domain is not in the aligned region.

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