DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cd and Ptgs1

DIOPT Version :9

Sequence 1:NP_651081.1 Gene:cd / 42681 FlyBaseID:FBgn0263986 Length:830 Species:Drosophila melanogaster
Sequence 2:NP_058739.4 Gene:Ptgs1 / 24693 RGDID:3439 Length:602 Species:Rattus norvegicus


Alignment Length:698 Identity:136/698 - (19%)
Similarity:224/698 - (32%) Gaps:257/698 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   136 LEEGLQPNEVNTPSFRHYRSLSTNPEARKLARRGY-----VENQATIDIAKRFNYTKQPGRSNIG 195
            |...|:|    :|||.|:           |...||     |......::..|...|.   |||: 
  Rat    80 LRSSLRP----SPSFTHF-----------LLTHGYWIWEFVNATFIREVLMRLVLTV---RSNL- 125

  Fly   196 WGPKIVLPDPTVLRLECDFNARYRRSTGVCNNKQHPRTYGASMVPYRRMVSPDYADGIAAPRVSH 260
                  :|.|.                          ||.         .:.||....:...||:
  Rat   126 ------IPSPP--------------------------TYN---------TAHDYISWESFSNVSY 149

  Fly   261 HGRLPPA--------------RQV--------SLKIHRSSYETDSNFTVMLAVFGQFMDHDITAT 303
            :.|:.|:              :|:        .|.:.|..........|:.|.|.|...|....|
  Rat   150 YTRILPSVPKDCPTPMGTKGKKQLPDIHLLAQRLLLRREFIPAPQGTNVLFAFFAQHFTHQFFKT 214

  Fly   304 SLTTSQEGESIDCCVAATREQHPECYPVDILPDDPYYKQYNISCMNFVRSAPAPTGRFGPRMQLN 368
            |                                                      |:.||  ...
  Rat   215 S------------------------------------------------------GKMGP--GFT 223

  Fly   369 QATAF-IDASVVYGNLEQRQNQLRSFINGSLRMFVTDDGRQLLPISSNPAD-------GCNRVQM 425
            :|... :|...:||:..:||..||.|.:|.|:..|.|.  ::.|.|...|.       |....:.
  Rat   224 KALGHGVDLGHIYGDSLERQYHLRLFKDGKLKYQVLDG--EVYPPSVEQASVLMRYPPGVPPEKQ 286

  Fly   426 TRLGKYCFESGDDRANENLLLTSMHL---LWARHHNYLARQLQEQNPHWEDERLYQEARKILGAQ 487
            ..:|:..|.          ||..:.|   :|.|.||.:...|:|::|.|:||:|:|..|.||..:
  Rat   287 MAVGQEVFG----------LLPGLMLFSTIWLREHNRVCDLLKEEHPTWDDEQLFQTTRLILIGE 341

  Fly   488 MAHITYNEFLPVLLGKNISEAKGLLPAKHNLNAPDTYDPEVDPSIANCFAAAAFRFA-------- 544
            ...|...|::..|.|.       .|..|        :|||:       ...|.|::.        
  Rat   342 TIKIIIEEYVQHLSGY-------FLQLK--------FDPEL-------LFRAQFQYRNRIALEFN 384

  Fly   545 -----HTLLPGLFNISRDNSTPEAIELHKMLFNPFSLWAEHGIDHALMTAANTPVMQVDRFFSLE 604
                 |.|:|..|.:.....:.|     :.|||. |:..::|:: ||:.|           ||.:
  Rat   385 HLYHWHPLMPDSFQVGSQEYSYE-----QFLFNT-SMLVDYGVE-ALVDA-----------FSRQ 431

  Fly   605 VTQKLFEG---------TAEDRVPLCGLDLVSLNIQRGRDHGIPSYPVFRRHCRLPTVDTWEEMS 660
            ...::..|         .|||            .|:..|:..:.|:..:|:...|....:::|.:
  Rat   432 RAGRIGGGRNFDYHVLHVAED------------VIKESREMRLQSFNEYRKRFGLKPYTSFQEFT 484

  Fly   661 QAIDNATLDSIRQIYESPQDVDVYTGALSEPPLDGAIFGPLLSCMVSDQFLRLKLGD-----SHW 720
            ...:.|.  .:.::|.....::.|.|.:.|.....::||..:..|.:...|:..||:     .:|
  Rat   485 GEKEMAA--ELEELYGDIDALEFYPGLMLEKCQPNSLFGESMIEMGAPFSLKGLLGNPICSPEYW 547

  Fly   721 YERKMGPQKFTKAQLAEIYKT-SLAAIICRNSDGITRVREHVMQRLRD 767
                 .|..|.......|..| ||..::|.|    |:...:|..|:.|
  Rat   548 -----KPSTFGGDVGFNIVNTASLKKLVCLN----TKTCPYVSFRVPD 586

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cdNP_651081.1 An_peroxidase 218..755 CDD:281139 114/597 (19%)
peroxinectin_like 364..750 CDD:188655 92/424 (22%)
Ptgs1NP_058739.4 EGF_CA 35..72 CDD:238011
prostaglandin_endoperoxide_synthase 92..578 CDD:188648 127/672 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2408
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.