DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cd and Ptgs2

DIOPT Version :9

Sequence 1:NP_651081.1 Gene:cd / 42681 FlyBaseID:FBgn0263986 Length:830 Species:Drosophila melanogaster
Sequence 2:NP_035328.2 Gene:Ptgs2 / 19225 MGIID:97798 Length:604 Species:Mus musculus


Alignment Length:562 Identity:115/562 - (20%)
Similarity:192/562 - (34%) Gaps:153/562 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   231 PRTYGA----------SMVPYRRMVSPDYADGIAAPR-VSHHGRLPPARQVSLKI--HRSSYETD 282
            |.||..          |.:.|.....|..||....|. |..:..||.:::|..|:  .|......
Mouse   113 PPTYNVHYGYKSWEAFSNLSYYTRALPPVADDCPTPMGVKGNKELPDSKEVLEKVLLRREFIPDP 177

  Fly   283 SNFTVMLAVFGQFMDHDITATSLTTSQEGESIDCCVAATREQHPECYPVDILPDDPYYKQYNISC 347
            ....:|.|.|.|...|....|                    .|                      
Mouse   178 QGSNMMFAFFAQHFTHQFFKT--------------------DH---------------------- 200

  Fly   348 MNFVRSAPAPTGRFGPRMQLNQATAFIDASVVYGNLEQRQNQLRSFINGSLRMFVTDDGRQLLPI 412
                :..|..|...|..:.||.         :||....||::||.|.:|.|:..|.  |.::.| 
Mouse   201 ----KRGPGFTRGLGHGVDLNH---------IYGETLDRQHKLRLFKDGKLKYQVI--GGEVYP- 249

  Fly   413 SSNPADGCNRVQMTRLGKYCFESGDDRANENL----------LLTSMHL---LWARHHNYLARQL 464
               |.....:|:|..         .....|||          |:..:.:   :|.|.||.:...|
Mouse   250 ---PTVKDTQVEMIY---------PPHIPENLQFAVGQEVFGLVPGLMMYATIWLREHNRVCDIL 302

  Fly   465 QEQNPHWEDERLYQEARKILGAQMAHITYNEFLPVLLGKNISEAKGLLPAKHNLNAPDTYDPEV- 528
            ::::|.|.||:|:|.:|.||..:...|...:::..|.|.:...               .:|||: 
Mouse   303 KQEHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSGYHFKL---------------KFDPELL 352

  Fly   529 -------DPSIANCFAAAAFRFAHTLLPGLFNISRDNSTPEAIELHKMLFNPFSLWAEHGIDHAL 586
                   ...||:.|  ......|.|||..|||.     .:.....:.|:|. |:..|||:    
Mouse   353 FNQQFQYQNRIASEF--NTLYHWHPLLPDTFNIE-----DQEYSFKQFLYNN-SILLEHGL---- 405

  Fly   587 MTAANTPVMQVDRFFSLEVTQKLFEGTAEDRVPLCGLDLVSLNIQRGRDHGIPSYPVFRRHCRLP 651
                    .|....|:.::..::..|.   .||:....:...:|.:.|:....|...:|:...|.
Mouse   406 --------TQFVESFTRQIAGRVAGGR---NVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLK 459

  Fly   652 TVDTWEEMSQAIDNATLDSIRQIYESPQDVDVYTGALSEPPLDGAIFGPLLSCMVSDQFLRLKLG 716
            ...::||::...:.|.  .::.:|.....:::|...|.|.|...||||..:..:.:...|:..:|
Mouse   460 PYTSFEELTGEKEMAA--ELKALYSDIDVMELYPALLVEKPRPDAIFGETMVELGAPFSLKGLMG 522

  Fly   717 D-----SHWYERKMGPQKFTKAQLAEIYKTSLAAIICRNSDG 753
            :     .:|.....|.:...|.    |...|:.::||.|..|
Mouse   523 NPICSPQYWKPSTFGGEVGFKI----INTASIQSLICNNVKG 560

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cdNP_651081.1 An_peroxidase 218..755 CDD:281139 115/562 (20%)
peroxinectin_like 364..750 CDD:188655 88/411 (21%)
Ptgs2NP_035328.2 EGF_CA 19..55 CDD:238011
prostaglandin_endoperoxide_synthase 75..562 CDD:188648 115/562 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2408
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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