DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cd and Ptgs1

DIOPT Version :9

Sequence 1:NP_651081.1 Gene:cd / 42681 FlyBaseID:FBgn0263986 Length:830 Species:Drosophila melanogaster
Sequence 2:NP_032995.1 Gene:Ptgs1 / 19224 MGIID:97797 Length:602 Species:Mus musculus


Alignment Length:586 Identity:123/586 - (20%)
Similarity:207/586 - (35%) Gaps:174/586 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   276 RSSYETDSNFTVMLAVFGQFMDHDITATSLTTSQEGESIDCCVAATREQHPECYPVDILPDDPYY 340
            |:|.....:||..|...|.::...:.||.:.     |.:...|...|.        :::|..|.|
Mouse    81 RNSLRPSPSFTHFLLTHGYWLWEFVNATFIR-----EVLMRLVLTVRS--------NLIPSPPTY 132

  Fly   341 KQYN--ISCMNF-------------VRSAPAPTGRFG----PRMQL------------------N 368
            ...:  ||..:|             .:..|.|.|..|    |.:||                  |
Mouse   133 NSAHDYISWESFSNVSYYTRILPSVPKDCPTPMGTKGKKQLPDVQLLAQQLLLRREFIPAPQGTN 197

  Fly   369 QATAF---------------------------IDASVVYGNLEQRQNQLRSFINGSLRMFVTDDG 406
            ...||                           :|...:||:..:||..||.|.:|.|:..|.|. 
Mouse   198 ILFAFFAQHFTHQFFKTSGKMGPGFTKALGHGVDLGHIYGDNLERQYHLRLFKDGKLKYQVLDG- 261

  Fly   407 RQLLPISSNPAD-------GCNRVQMTRLGKYCFESGDDRANENLLLTSMHL---LWARHHNYLA 461
             ::.|.|...|.       |....:...:|:..|.          ||..:.|   :|.|.||.:.
Mouse   262 -EVYPPSVEQASVLMRYPPGVPPERQMAVGQEVFG----------LLPGLMLFSTIWLREHNRVC 315

  Fly   462 RQLQEQNPHWEDERLYQEARKILGAQMAHITYNEFLPVLLGKNISEAKGLLPAKHNLNAPDTYDP 526
            ..|:|::|.|:||:|:|..|.||..:...|...|::..|.|.       .|..|        :||
Mouse   316 DLLKEEHPTWDDEQLFQTTRLILIGETIKIVIEEYVQHLSGY-------FLQLK--------FDP 365

  Fly   527 EVDPSIANCFAAAAFRFA-------------HTLLPGLFNISRDNSTPEAIELHKMLFNPFSLWA 578
            |:       ...|.|::.             |.|:|..|.:.....:.|     :.|||. |:..
Mouse   366 EL-------LFRAQFQYRNRIAMEFNHLYHWHPLMPNSFQVGSQEYSYE-----QFLFNT-SMLV 417

  Fly   579 EHGIDHALMTAANTPVMQVDRFFSLEVTQKLFEGTAED-RVPLCGLDLVSLNIQRGRDHGIPSYP 642
            ::|:: ||:.|           ||.:...::..|...| .|....:|:    |:..|:..:..:.
Mouse   418 DYGVE-ALVDA-----------FSRQRAGRIGGGRNFDYHVLHVAVDV----IKESREMRLQPFN 466

  Fly   643 VFRRHCRLPTVDTWEEMSQAIDNATLDSIRQIYESPQDVDVYTGALSEPPLDGAIFGPLLSCMVS 707
            .:|:...|....:::|::...:.|.  .:.::|.....::.|.|.|.|.....:|||..:..|.:
Mouse   467 EYRKRFGLKPYTSFQELTGEKEMAA--ELEELYGDIDALEFYPGLLLEKCQPNSIFGESMIEMGA 529

  Fly   708 DQFLRLKLGD-----SHWYERKMGPQ-KFTKAQLAEIYKTSLAAIICRNSDGITRVREHVMQRLR 766
            ...|:..||:     .:|.....|.. .|.....|     ||..::|.|    |:...:|..|:.
Mouse   530 PFSLKGLLGNPICSPEYWKPSTFGGDVGFNLVNTA-----SLKKLVCLN----TKTCPYVSFRVP 585

  Fly   767 D 767
            |
Mouse   586 D 586

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cdNP_651081.1 An_peroxidase 218..755 CDD:281139 119/572 (21%)
peroxinectin_like 364..750 CDD:188655 96/460 (21%)
Ptgs1NP_032995.1 EGF_CA 35..72 CDD:238011
prostaglandin_endoperoxide_synthase 92..578 CDD:188648 116/565 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2408
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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