DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cd and pxn-2

DIOPT Version :9

Sequence 1:NP_651081.1 Gene:cd / 42681 FlyBaseID:FBgn0263986 Length:830 Species:Drosophila melanogaster
Sequence 2:NP_509834.1 Gene:pxn-2 / 181288 WormBaseID:WBGene00004257 Length:1328 Species:Caenorhabditis elegans


Alignment Length:777 Identity:248/777 - (31%)
Similarity:383/777 - (49%) Gaps:107/777 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   118 DGAQAVSAGIKALGDREILEEGLQPNEVNTPSFRHYRSLSTNPEARKL----ARRGYVEN----Q 174
            :..|.|...:.:..|::.:::...||:: :..|:...:|      :|:    ||..|.|:    |
 Worm   556 EAKQKVEKALSSTKDQQRMDKIESPNDL-SKLFKFAINL------KKVDLGKAREIYEESIRLVQ 613

  Fly   175 ATIDIAKRFNYTK-QPGRSNIGWGPKIVLPDPTVLRL-------------ECD---FNARYRRST 222
            ..||....|.... .|   |:.:  :.|||...|..|             .|:   |.::||...
 Worm   614 MHIDNGLAFESAMISP---NVSY--EAVLPVSYVQTLMEKSGCQTGQFAESCEDHCFFSKYRSYD 673

  Fly   223 GVCNNKQHPRTYGASMVPYRRMVSPDYADGIAAPRVSHHGR------LPPARQVSLKIHRSSYET 281
            |.|||.:|| .:|.|.:.:.|::.|.|.:|...|.....|:      :|.||:|| ::...:.||
 Worm   674 GQCNNHEHP-WWGVSEMAFMRLLPPRYENGFNTPVGWEKGKRYNGYEVPNARKVS-RVLIGTDET 736

  Fly   282 --DSNFTVMLAVFGQFMDHDITAT--SLTTSQEGESIDCCVAATREQHPECYPVDILPDDP---- 338
              .|:.:.|...:|||:|||:|.|  :||.....|...|  ..|.|....|:.:.:..|||    
 Worm   737 TPHSHLSAMTMQWGQFIDHDLTLTAPALTRHSYKEGAFC--NRTCENADPCFNIQLEADDPKLHT 799

  Fly   339 -YYKQYNISCMNFVRS-APAPTGRFGP-------RMQLNQATAFIDASVVYGNLEQRQNQLRSFI 394
             .|:::  .||.|.|: |...:|...|       |.|||..|:::|||.:|||.|::..:||...
 Worm   800 GLYQKH--PCMEFERNGAACGSGETSPIFQRVTYRDQLNLLTSYLDASGIYGNSEEQALELRDLY 862

  Fly   395 --NGSLRM-FVTDDGRQLLPISSNPADGCNRVQMTRLGKYCFESGDDRANENLLLTSMHLLWARH 456
              :|.||. .|:...:..:|...:....|.|.........||.:||.||||.|.|.|||.::.|.
 Worm   863 SDHGLLRFDIVSGANKPYMPFEKDSDMDCRRNFSRENPIKCFLAGDVRANEQLGLMSMHTIFLRE 927

  Fly   457 HNYLARQLQEQNPHWEDERLYQEARKILGAQMAHITYNEFLPVLLGKN-----ISEAKGLLPAKH 516
            ||.:|.:|.|.|.:|:.|.::||.||::||.:.|||||.:||.:|||.     |.|.||      
 Worm   928 HNRIASRLLEVNENWDGETIFQETRKLIGAMLQHITYNAWLPKILGKATYNTIIGEYKG------ 986

  Fly   517 NLNAPDTYDPEVDPSIANCFAAAAFRFAHTLL-PGLFNISRD-NSTPEA-IELHKMLFNPFSLWA 578
                   |:|:|:|:|||.||.||.||||||: ..||...:| ..|.:. :.||...|.|..|.:
 Worm   987 -------YNPDVNPTIANEFATAALRFAHTLINTHLFRFDKDFKETKQGHLPLHNAFFAPERLVS 1044

  Fly   579 EHGIDHAL--MTAANTPVMQVDRFFSLEVTQKLFEGTAEDRVPLCGLDLVSLNIQRGRDHGIPSY 641
            |.|:|..|  :.||...:.:.|:..:.|:|:|||     :|.....|||.:||||||||||:||:
 Worm  1045 EGGVDPLLRGLFAAPIKMPRPDQVLNKELTEKLF-----NRFHEVALDLAALNIQRGRDHGLPSW 1104

  Fly   642 PVFRRHCRLPTVDTWEEMSQAIDNAT-LDSIRQIYESPQDVDVYTGALSEPPLDGAIFGPLLSCM 705
            ..:|:.|.|....||.:|...:.|.| :..::.:|...:::|::.|.::|.....|:.||.|:|:
 Worm  1105 TEYRKFCNLTVPKTWSDMKNIVQNDTVISKLQSLYGVTENIDLWVGGVTEKRTADALMGPTLACI 1169

  Fly   706 VSDQFLRLKLGDSHWYERKMGPQKFTKAQLAEIYKTSLAAIICRNSDGITRVREHVMQRLRDGGN 770
            ::|||.||:.||..|||.:   :.|:||||.:|.|.:|:.|||.|.|.|.|::..:.....:...
 Worm  1170 IADQFKRLRDGDRFWYENE---EMFSKAQLRQIKKVTLSKIICTNGDDIDRIQRDIFVYHGNSTQ 1231

  Fly   771 PHVDCQDLEGFHFNFEPWSEKQQPQDLHSAGISR---GSTSVRVMSKANHQAHNVTLHIDKG 829
            .:..|:.|...:.|.  |:.........|:.::|   |........|..|.....:.| |||
 Worm  1232 FYEPCESLPEINLNM--WTTCCDAMCSSSSTLARNAIGGDEKAKRRKRRHHHSKKSCH-DKG 1290

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cdNP_651081.1 An_peroxidase 218..755 CDD:281139 208/573 (36%)
peroxinectin_like 364..750 CDD:188655 155/399 (39%)
pxn-2NP_509834.1 LRRNT 16..43 CDD:396168
leucine-rich repeat 28..44 CDD:275380
PRK15370 <35..>155 CDD:185268
leucine-rich repeat 46..69 CDD:275378
LRR_8 47..104 CDD:404697
leucine-rich repeat 70..93 CDD:275378
leucine-rich repeat 94..116 CDD:275378
leucine-rich repeat 117..140 CDD:275378
leucine-rich repeat 141..154 CDD:275378
Ig 346..432 CDD:416386
Ig strand B 369..373 CDD:409353
Ig strand C 382..386 CDD:409353
Ig strand E 405..410 CDD:409353
Ig strand F 419..424 CDD:409353
I-set 445..533 CDD:400151
Ig strand A' 453..457 CDD:409353
Ig strand B 460..469 CDD:409353
Ig strand C 475..480 CDD:409353
Ig strand C' 483..486 CDD:409353
Ig strand D 491..496 CDD:409353
Ig strand E 497..505 CDD:409353
Ig strand F 512..520 CDD:409353
Ig strand G 523..533 CDD:409353
peroxidasin_like 798..1238 CDD:188658 168/462 (36%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2408
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D276568at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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