DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Nup133 and npp-15

DIOPT Version :10

Sequence 1:NP_651080.2 Gene:Nup133 / 42680 FlyBaseID:FBgn0039004 Length:1200 Species:Drosophila melanogaster
Sequence 2:NP_498724.4 Gene:npp-15 / 176114 WormBaseID:WBGene00003801 Length:1129 Species:Caenorhabditis elegans


Alignment Length:1171 Identity:236/1171 - (20%)
Similarity:444/1171 - (37%) Gaps:295/1171 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    89 PVVVNEALTFAGPGAGTVTAKVTQN------GWAWVVQGRRLLIWQYKDTAKSGSPPRVGKLARR 147
            |.:|.||. .....|....::||.|      .:.||:...::.||:...::.....|        
 Worm    19 PALVKEAF-LNNWHASAHRSEVTSNCASLNDRYCWVLSRNQIFIWERAKSSHRAIIP-------- 74

  Fly   148 GGGLAQCRELTLPYSDLGHKSDLISVFQ--TEGQQMASC---IAVSATGEVRYWSSIAHD----- 202
                   .:|.||.|.|......:.|:.  ..|.....|   :.||..|.:|:|:||...     
 Worm    75 -------TQLPLPTSGLPRSVKCVVVYDGVHRGANKTPCPGILVVSPEGVLRHWTSIESQTYIEE 132

  Fly   203 ----GNSVDLSILTGQEFVQLLSLP---TQQGYLAVTTTCNLVFLRVGLTNGRYTLHHKT----- 255
                .|.|.|.       |:|...|   ....:|..||:..:.||     ||:.....||     
 Worm   133 VLDINNEVALR-------VELTDEPIDGKSASFLLTTTSGTVYFL-----NGKGQDSAKTGALEC 185

  Fly   256 IKPATSFLGGFGKKFASILIGMNTGADKDQTLVGMCCESNLESGETIVAVLSDRAIQRWSLSNNG 320
            .|.|.....||.::.:||:.|   |..|:.|.: :......:|.:.:|..:|...:..::     
 Worm   186 NKVAGREAHGFRRRLSSIMFG---GESKESTSL-ITNSFQHQSKDLLVVTVSPDVLTVYN----- 241

  Fly   321 NTENLLYEDADMLRRIREEF----ITNFWKFRLPADSLEIDLHLLDFHVVKNKAYILAGAVN--- 378
                 :|...::.....:||    |.:|::..|....|::...|:|..|.::...||.|..:   
 Worm   242 -----MYTPCELWSLKTKEFFQPKIASFFEADLKRTPLKVRARLIDAAVFRDGLMILIGGTHEES 301

  Fly   379 -AAHAPQMCYALVTGTAQAERMLLESFTPLNMNKFFSAKTEEDCLSVRFVVGSSHIYLYTSKVVY 442
             :.|...:..:....|.|...::..:..|:|.::...:|.::...|                   
 Worm   302 QSVHMFMVWMSANWQTEQPTGVVWSARVPMNEHRALFSKIDDSIYS------------------- 347

  Fly   443 PLHLTNSVPTAELEAEKIEFHQHDDRILSAVICSQLPLFFSRTHGLVSITPGDFDGTEMMNMSSC 507
              :||..:|....|::|.:                      ||.|::.|.|              
 Worm   348 --NLTLCIPKNTAESKKAD----------------------RTDGIIIINP-------------- 374

  Fly   508 NTPDLYAPNSCNASFAVADHSALTNSTNNLHL-FEL----DPDEMYNELS----DEV--GQLKAA 561
                         .|||           :|:| |:|    .|:.:|..:|    |::  ..:.:.
 Worm   375 -------------YFAV-----------SLYLPFDLAKPKKPESLYRHVSIPPRDQLLGYAICSQ 415

  Fly   562 FLYHMKRNSNMVKTIVDELLRNVTAADPSG-APMDAYKLDRIVITIAEDLAEDIPIADPRWEEAL 625
            ::|.|...|. |.||  .||       |.| |....|..:::|:.......:|.||......|.:
 Worm   416 YVYIMMLESG-VSTI--RLL-------PRGFADSSIYTHEQVVVPSLSVGTDDWPILSELLSEMV 470

  Fly   626 AD--------QEMNR--------HAIGSSRSMQIINQLRDKIIA-----FQHFI----------- 658
            |.        |.::|        |...|...::.|.::.|:.||     |.:.|           
 Worm   471 ASGLPKTPLYQSLHRAFELFAEKHMAESEEELKAIIKMPDQEIARIVSQFLYAIIDYSDAANKTD 535

  Fly   659 TFLHSSL--------------VWDKLNVIPCGSH-----SLKPTGCILADISEKIVAAMALRSIQ 704
            |.||:..              |::::...|.|..     ||:..|.:|.::||::.|:.|:.:.:
 Worm   536 TELHAKRVLTSRIMLFLKHMGVYERIISSPLGISRGGILSLRVGGTMLGEVSERVAASTAIWTWK 600

  Fly   705 T--KLPKLIEEAIDATVALWHEEPQGSLTYQDIFYVKLSRFQNVFEALADIADDRIAAQNQT-TI 766
            |  :....:.:||...|....|.....|..:|..:.:.....::....|...:..:..:.:: ..
 Worm   601 TSNETNSAVFDAIIEKVLRIPEVQDLGLKDKDALFGRCGLVHHIPVVAAQQLEKNVIGKTKSHRF 665

  Fly   767 SVAHFVNEINSIVLDVLGQVFKYRKQHASSFRLSHEK--LPSYENLPWTAMAGSAGVRDTLTRLI 829
            .|.|.|.|:.|.:           |:...|:|....|  :|.:. :.||....::..||...::|
 Worm   666 EVFHAVCELLSGI-----------KETIISWRNCRTKVAIPKFP-IWWTLETFASCYRDVAEKII 718

  Fly   830 DISVRYGSHCVSETELKQQLYQQIFELIDLVLDGRKTYLKSVRDTEKFN--VLQQQFEAQRRELI 892
            : .::.||...||   :.:|...|..:.|..|        |..|::..|  |||        |:|
 Worm   719 E-ELKNGSSTDSE---RARLLMYILSIYDFYL--------SESDSQPDNDKVLQ--------EMI 763

  Fly   893 SVLIKDRQYEYAAKIAEKYLDFQSLV---LICDETQDKERLEDYTRKYEEYDFSQFAINWHLRQN 954
            : |.|...   |.::|||:.||.:||   |..|....::..|.|.:.:|:.||..:..: :|:::
 Worm   764 A-LGKPAD---AMELAEKHKDFGTLVKNYLTTDVGTRQKTFERYKKMFEKDDFEMYLCD-YLKEH 823

  Fly   955 RHGEVFERFKGNQTALAQFMRDHPSLGWIQLIFNGDFERAAKVLYELAQCETEFVARKKSMLSLA 1019
            ...:|..:..|::  :..::.:...|.:.:.|.|..|.:||..|..||..||:..::....|:.|
 Worm   824 GRNDVLLQQGGSR--VDAYLDNFKELRYSREIANKQFGKAALTLMSLADAETKSFSKFVEFLTRA 886

  Fly  1020 KLAAFAAAE-SDLTAQVEKINADLTLVEYQSQLGHDVLE-SFGFDPAEQKVLKAEEIISLYIA-E 1081
            ...|.::.: :|::..::........::::.::..::|: .||.|  ...::..|:::...:| :
 Worm   887 YYCACSSIDGTDVSEVLDFYKRRYPEMKHRKRIPTEILKICFGND--LDAMMSVEDMLEWNMAVQ 949

  Fly  1082 ENETASETEFRKALELLSYVEQPY----DMRHKI---WCAAIKRDNWTDYDPNNAVHYMQKLLFY 1139
            .|:.||...|.:|..||:.:...:    :::.||   |.|.:..|.|........|.  :|.:|.
 Worm   950 PNDEASVEGFARAFHLLADLLAVHPDSDELKKKIDKTWKALVDYDEWNRVRSKEDVE--KKTIFG 1012

  Fly  1140 K 1140
            |
 Worm  1013 K 1013

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nup133NP_651080.2 Nucleoporin_N 87..489 CDD:400932 84/435 (19%)
Nucleoporin_C 767..1122 CDD:427181 84/371 (23%)
npp-15NP_498724.4 Nucleoporin_C <759..>886 CDD:427181 36/141 (26%)

Return to query results.
Submit another query.