DRSC/TRiP Functional Genomics Resources

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Protein Alignment loco and RGS8

DIOPT Version :9

Sequence 1:NP_732773.1 Gene:loco / 42672 FlyBaseID:FBgn0020278 Length:1541 Species:Drosophila melanogaster
Sequence 2:NP_203131.1 Gene:RGS8 / 85397 HGNCID:16810 Length:198 Species:Homo sapiens


Alignment Length:150 Identity:52/150 - (34%)
Similarity:78/150 - (52%) Gaps:7/150 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly   799 PAPPSAITASVAAEGAAQDHGCPSSWAGSFERMLQDAAGMQTFSEFLKKEFSAENIYFWTACERY 863
            |..|:.....::.|.|.:       ||.||:.:|....|:..|..|||.|||.||:.||.|||.:
Human    53 PDKPNRALKRLSTEEATR-------WADSFDVLLSHKYGVAAFRAFLKTEFSEENLEFWLACEEF 110

  Fly   864 RLLESEADRVAQAREIFAKHLANNSSDPVNVDSQARSLTEEKLADAAPDIFAPAQKQIFSLMKFD 928
            :...|.|..|::|..||.:.:...:...||:|.|.|..|.:.|.:.:...|..||.::.|||:.|
Human   111 KKTRSTAKLVSKAHRIFEEFVDVQAPREVNIDFQTREATRKNLQEPSLTCFDQAQGKVHSLMEKD 175

  Fly   929 SYQRFIRSDLYKSCVEAEQK 948
            ||.||:||.:|...:...|:
Human   176 SYPRFLRSKMYLDLLSQSQR 195

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
locoNP_732773.1 PDZ_signaling 69..145 CDD:238492
PTB_RGS12 251..391 CDD:269984
RGS_R12-like 828..941 CDD:188661 44/112 (39%)
RGS12_RBD 1073..1145 CDD:176412
RBD 1144..1213 CDD:128731
RGS8NP_203131.1 RGS_RGS8 64..188 CDD:188666 49/130 (38%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3589
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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