DRSC/TRiP Functional Genomics Resources

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Protein Alignment loco and Rgs8

DIOPT Version :10

Sequence 1:NP_732773.1 Gene:loco / 42672 FlyBaseID:FBgn0020278 Length:1541 Species:Drosophila melanogaster
Sequence 2:NP_080656.2 Gene:Rgs8 / 67792 MGIID:108408 Length:180 Species:Mus musculus


Alignment Length:150 Identity:51/150 - (34%)
Similarity:77/150 - (51%) Gaps:7/150 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly   799 PAPPSAITASVAAEGAAQDHGCPSSWAGSFERMLQDAAGMQTFSEFLKKEFSAENIYFWTACERY 863
            |..|:.....::.|.|.:       ||.||:.:|....|:..|..|||.|||.||:.||.|||.:
Mouse    35 PDKPNRALKRLSTEEATR-------WAESFDVLLSHKYGVAAFRAFLKTEFSEENLEFWLACEEF 92

  Fly   864 RLLESEADRVAQAREIFAKHLANNSSDPVNVDSQARSLTEEKLADAAPDIFAPAQKQIFSLMKFD 928
            :...|.|..|.:|..||.:.:...:...||:|.|.|..|.:.:.:.:...|..||.::.|||:.|
Mouse    93 KKTRSTAKLVTKAHRIFEEFVDVQAPREVNIDFQTREATRKNMQEPSLTCFDQAQGKVHSLMEKD 157

  Fly   929 SYQRFIRSDLYKSCVEAEQK 948
            ||.||:||.:|...:...|:
Mouse   158 SYPRFLRSKMYLDLLSQSQR 177

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
locoNP_732773.1 PDZ_RGS12-like 70..145 CDD:467194
PTB_RGS12 251..391 CDD:269984
RGS_R12-like 828..941 CDD:188661 43/112 (38%)
RBD1_RGS12_like 1072..1141 CDD:340515
RBD2_RGS12_like 1142..1212 CDD:340587
GoLoco 1354..1375 CDD:214645
Rgs8NP_080656.2 RGS_RGS8 46..170 CDD:188666 48/130 (37%)
Blue background indicates that the domain is not in the aligned region.

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