DRSC/TRiP Functional Genomics Resources

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Protein Alignment loco and Rgs19

DIOPT Version :10

Sequence 1:NP_732773.1 Gene:loco / 42672 FlyBaseID:FBgn0020278 Length:1541 Species:Drosophila melanogaster
Sequence 2:NP_067693.1 Gene:Rgs19 / 59293 RGDID:629471 Length:216 Species:Rattus norvegicus


Alignment Length:161 Identity:54/161 - (33%)
Similarity:82/161 - (50%) Gaps:23/161 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   784 QHQLSLLQVPKVLTTPAPPSAITASVAAEGAAQDHGCPSSWAGSFERMLQDAAGMQTFSEFLKKE 848
            :.:|..|...:|.|.|:|...                 .|||.||::::....|...|..||:.|
  Rat    64 ESKLQPLPSCEVCTPPSPEEV-----------------QSWAQSFDKLMHSPTGRSVFRAFLRTE 111

  Fly   849 FSAENIYFWTACERYRLLESEADRVA---QAREIFAKHLANNSSDPVNVDSQARSLTEEKLADAA 910
            :|.||:.||.|||.   |::||||..   :||.|:..:::..|...|::||:.|.....|:.:.:
  Rat   112 YSEENMLFWLACEE---LKTEADRHVVDEKARLIYEDYVSILSPKEVSLDSRVREGINRKMQEPS 173

  Fly   911 PDIFAPAQKQIFSLMKFDSYQRFIRSDLYKS 941
            |..|..||.||::||..|||.||:.|..|:|
  Rat   174 PHTFDDAQLQIYTLMHRDSYPRFLTSPTYRS 204

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
locoNP_732773.1 PDZ_RGS12-like 70..145 CDD:467194
PTB_RGS12 251..391 CDD:269984
RGS_R12-like 828..941 CDD:188661 43/115 (37%)
RBD1_RGS12_like 1072..1141 CDD:340515
RBD2_RGS12_like 1142..1212 CDD:340587
GoLoco 1354..1375 CDD:214645
Rgs19NP_067693.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..30
RGS 87..204 CDD:470619 46/119 (39%)
Interaction with GIPC 207..216
Blue background indicates that the domain is not in the aligned region.

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