DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment loco and axin1

DIOPT Version :10

Sequence 1:NP_732773.1 Gene:loco / 42672 FlyBaseID:FBgn0020278 Length:1541 Species:Drosophila melanogaster
Sequence 2:XP_009297983.1 Gene:axin1 / 57931 ZFINID:ZDB-GENE-000403-1 Length:871 Species:Danio rerio


Alignment Length:892 Identity:176/892 - (19%)
Similarity:296/892 - (33%) Gaps:284/892 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   692 SMSASSSSHCLLEATNSEPDLGNRALPANASPFRRAWGQSSFR--TPRSDKVAKEQQQLGQSSPV 754
            |||.:....|.|      ||||                 |||.  .|| ..|..|:..|..|...
Zfish     2 SMSVNEKGICYL------PDLG-----------------SSFTEDAPR-PPVPGEEGDLVSSDGR 42

  Fly   755 RRTASMNASDNDMYIKTLMLDSDLKSSRSQHQLSLLQVPKVLTTPAPPSAITASVAAEGAAQDHG 819
            :...|..:|.:|    :|..::.:.:.| :..|.|...|:...:|.||..               
Zfish    43 QYNHSFYSSKSD----SLKNEASIATPR-RPDLDLGYEPEGSASPTPPYL--------------- 87

  Fly   820 CPSSWAGSFERMLQDAAGMQTFSEFLKKEFSAENIYFWTACERYRLLES---EADRVAQAREIFA 881
               .||.|...:|.|..|:..|..|||:|..|:.:.||.||..:|..|:   ....:..|:.|:.
Zfish    88 ---KWAESLHSLLDDQDGIHLFRTFLKQEECADMLDFWFACSGFRKQEANDGNEKMLKLAKAIYK 149

  Fly   882 KHLANNSSDPVNVDSQARSLTEEKLADAA------PDIFAPAQKQIFSLMKFDSYQRFIRSDLY- 939
            |::.:|:.   .|..|.:..|:..:.|..      |.:|..||.:|.::|:.::|..|::||:| 
Zfish   150 KYILDNNG---IVSRQIKPATKSFIKDCVMKLHIDPAMFDQAQTEIQTMMEENTYPLFLKSDIYL 211

  Fly   940 ---------------KSCVEAEQKNQP--LPYS------GLDLDELLKTNFHLGAFSKLKKSASN 981
                           :|.|....|..|  ||..      ..|.:|           .::.:|...
Zfish   212 EYTRTGGESPKLFSDQSSVSGNGKVLPGYLPTVIEDVEWRCDQEE-----------EQIAESDPT 265

  Fly   982 AEDRRRKSLLPWHRKTRSKSRDRTEIMADMQHALMPAPPVPQN-------APLTSASLKLVCGQN 1039
            ..:|..:.||......|..:..|.:...:.:||....|..|..       ||.|||:        
Zfish   266 PSNRLTQKLLLETVPQRVANSKRYQDNREYRHASWREPVNPYYVNSGYALAPATSAN-------- 322

  Fly  1040 SLSDLHSSRSSLSSFDAGTATGGQGASTESVYSLCRVILTDGATTIVQTRPGETVGELVERLLEK 1104
                 .|.:.|:|| ||.|.:                 |||.:.                     
Zfish   323 -----DSEQQSMSS-DADTLS-----------------LTDSSV--------------------- 343

  Fly  1105 RNLVYPYYDIVFQGSTKSIDVQQPSQILAGKEVVIERRVAFKLDLPD-------PKVISVKSKPK 1162
             :.|.||            ..::|.:    :|:....:|..::.||.       ||.|.|  :|:
Zfish   344 -DGVPPY------------RYRKPHR----REIHESAKVNGRVPLPHIPRTNRIPKDIHV--EPE 389

  Fly  1163 KQLHEVIRPILSKYNYKMEQVQVIMRDTQVPIDLNQPVTMADGQRLRIVMVNSDFQVGGGSSMPP 1227
            |...|:|           .:::.::|:.:....|.:.:     :|:|:.....|..:..|.|:..
Zfish   390 KFAAELI-----------SRLEGVLREREAQEKLEERL-----KRVRLEEEGDDADISTGPSLAN 438

  Fly  1228 KQSKPMKPLPQ--GHLDELTNKVFNELLASKADAAASEKSRPVDLCSMKSNEAPSETSSLFERMR 1290
            .:..|...:..  |...|::   :|.|  ...||........:|....:..:.|...|....|..
Zfish   439 HRIPPAVHVQHYGGRYSEMS---YNGL--QLRDAHEENPESILDEHVQRVMKTPGCQSPGTGRHS 498

  Fly  1291 RQQRDGGNIPASKLPKL-------KKKSTSSSQQSEEAATTQ-----------AVADPKKPI--- 1334
            .:.|....:||.|:|.|       :.|..:......|||...           |...||:..   
Zfish   499 PKSRSPDGLPAGKIPGLMMPLSGGQGKHQARQGPKGEAAHLHHHKHIHHTHYAAAGKPKEQAEAE 563

  Fly  1335 IAKLKAGVKLQVTE-----RVAEHQDELLEG---------------LKRAQLARLEDQRGTEINF 1379
            .|::..|......:     :...:.|.:..|               |.:..:.:.||.|..|:..
Zfish   564 AARMHGGFAWNTEQHHYGPKSRNYADGMSVGPNTMDPMGYSSKGSTLSKRPVRKGEDGRNFEMRE 628

  Fly  1380 DLP--DFLKNKENLSAAVSKLRKV-RASLSPVSKV----------PATPTEIPQ-----PAPRLS 1426
            .||  |..:|::.|...:...::. |...||...:          ||.|:.:.:     |.....
Zfish   629 PLPADDMERNQKILQWMMEGEKEAGRYKRSPYGSISGPKKAQGHEPARPSSVERLGAVHPWVTAQ 693

  Fly  1427 ITRSQQPVSPMKVDQEPETDLPAATQDQTEFAKAPPPLPPKPKVLPI 1473
            :..:.||..|...|                     |.:||.|...|:
Zfish   694 LRNNVQPSHPFIQD---------------------PTMPPNPAPNPL 719

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
locoNP_732773.1 PDZ_RGS12-like 70..145 CDD:467194
PTB_RGS12 251..391 CDD:269984
RGS_R12-like 828..941 CDD:188661 34/137 (25%)
RBD1_RGS12_like 1072..1141 CDD:340515 8/68 (12%)
RBD2_RGS12_like 1142..1212 CDD:340587 15/76 (20%)
GoLoco 1354..1375 CDD:214645 6/35 (17%)
axin1XP_009297983.1 AXIN1_TNKS_BD 12..86 CDD:465215 24/102 (24%)
RGS_Axin 93..212 CDD:188662 34/121 (28%)
Axin_b-cat_bind 470..506 CDD:462616 5/35 (14%)
DIX 791..867 CDD:459936
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.