DRSC/TRiP Functional Genomics Resources

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Protein Alignment loco and rgs4

DIOPT Version :9

Sequence 1:NP_732773.1 Gene:loco / 42672 FlyBaseID:FBgn0020278 Length:1541 Species:Drosophila melanogaster
Sequence 2:NP_954968.1 Gene:rgs4 / 569876 ZFINID:ZDB-GENE-030131-9839 Length:215 Species:Danio rerio


Alignment Length:226 Identity:64/226 - (28%)
Similarity:104/226 - (46%) Gaps:54/226 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   778 LKSSRS-QHQLSLLQVPKVLTTPAPP--------------------SAITASVAAEGAAQDHGCP 821
            |||::. :|::..|     |..|.||                    :.:.....||        .
Zfish    13 LKSAKDIKHKIGFL-----LQKPDPPQEQKALKEKEKEKDKEKVKDTVVNRITPAE--------T 64

  Fly   822 SSWAGSFERMLQDAAGMQTFSEFLKKEFSAENIYFWTACERYRLLESEADRV-AQAREIFAKHLA 885
            ..|..||..::::..|.:.|:.||:.|:|.|||.||.|||.::  ::.||:: .:||.||.:::.
Zfish    65 EKWKTSFTNLIKNDDGRKAFASFLQSEYSQENIEFWVACEDFK--QTPADKMNLKARNIFERYIE 127

  Fly   886 NNSSDPVNVDSQARSLTEEKLADAAPDIFAPAQKQIFSLMKFDSYQRFIRSDLYKSCVEAEQKNQ 950
            .:|...||:||..|..|.:.|.......|..||.:||:||:.|||:||:||.|:....:....|:
Zfish   128 ADSPREVNLDSVTREQTRKNLEMCDVSCFDEAQSKIFTLMEKDSYRRFLRSRLFLELSQPAMDNK 192

  Fly   951 PLPYSGLDLDELLKTNFHLGAFSKLKKSASN 981
            |   .||:              .|:|:..|:
Zfish   193 P---CGLE--------------KKVKRQISD 206

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
locoNP_732773.1 PDZ_signaling 69..145 CDD:238492
PTB_RGS12 251..391 CDD:269984
RGS_R12-like 828..941 CDD:188661 44/113 (39%)
RGS12_RBD 1073..1145 CDD:176412
RBD 1144..1213 CDD:128731
rgs4NP_954968.1 RGS 71..183 CDD:295367 44/113 (39%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3589
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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