DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment loco and Rgs3

DIOPT Version :9

Sequence 1:NP_732773.1 Gene:loco / 42672 FlyBaseID:FBgn0020278 Length:1541 Species:Drosophila melanogaster
Sequence 2:XP_017449084.1 Gene:Rgs3 / 54293 RGDID:3566 Length:1144 Species:Rattus norvegicus


Alignment Length:1095 Identity:236/1095 - (21%)
Similarity:373/1095 - (34%) Gaps:360/1095 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    72 VEVRRGYNGFGFTISGQQPCRLSCIISSSPAEQAGLRSGDFLISVNGLNVS-----KLPHE---- 127
            :.:|||.:||||||....|.|:..:.|..|||:|||:..|.::.:|...|.     :|.||    
  Rat   196 ITIRRGKDGFGFTICCDSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSC 260

  Fly   128 --TVVQLI---------GNSFGSIRMQIAENYYS------------------------------D 151
              .::.|:         |...|.:|....::.:.                              |
  Rat   261 PSEIILLVWRVVPQIKPGPDGGVLRRASCKSTHDLLSPPNKREKNCTHGAPTRPEQRHSCHLVCD 325

  Fly   152 SSD--------------EENAHATLRGQLLAASLRHKPRF-----LHHKAKLHRLRNSPQKKLNP 197
            |||              :.:...||.. |..|:....|.:     |:..::|  ||...|:...|
  Rat   326 SSDGLLLGGWERYTEVGKRSGQHTLPA-LSRATTPTDPNYIILAPLNPGSQL--LRPVYQEDAIP 387

  Fly   198 PE------------------------------------AVEPHKSKSS-PDHPTLKPV------- 218
            .|                                    |:.||...|| ..:.||.|.       
  Rat   388 EEPGTTTKGKSYTGLGKKSRLMKTVQTMKGHSNYQDCSALRPHIPHSSYGTYVTLAPKVLVFPVF 452

  Fly   219 -----LEDPPLTANLSKAA---DVANVSAMVRAVGSAAL----------ECRVIVG--YLGTIEM 263
                 |.:|..|..||:..   :..|.::.|.....:.|          .|.|:..  ||.::::
  Rat   453 VQPLDLCNPARTLLLSEELLLYEGRNKTSQVTLFAYSDLLLFTKEEEPGRCDVLRNPLYLQSVKL 517

  Fly   264 PKQISHSSK-----LQTVRSCIRKL-----RQEKRQPTIVLMCITPDSLSLQSSSGGVLATYSSA 318
            .:..|...|     |.....|:..|     .|:||    |..|::.:....|.     ||...:.
  Rat   518 QEGSSEDLKFCVLYLAEKAECLFTLEAHSQEQKKR----VCWCLSENIAKQQQ-----LAATPTE 573

  Fly   319 RLNFVSSSSESENRFF-GLVTSAVHNTQIEEEYEPSAGSAAAAGHISISHSCHVFVIDTKLIEHA 382
            |..|.:.:.|.|.... |....|...|..:   :||.......|.         .:..:|....:
  Rat   574 RKMFETEADEKEMPLVEGKGPGAEERTPSK---DPSPSQELPPGQ---------ELPPSKDPSPS 626

  Fly   383 QHLQRAHEFRLQCTRDPISNLCLEFPNNSEYVVNLVRSMYTMRILPPASRSHQADYEAGAG---- 443
            |.|....:  |..::||..:  .|.|...|              ||| |:......|..||    
  Rat   627 QELPPGQD--LPPSKDPSPS--QELPPGQE--------------LPP-SKDPSPSQELPAGQDLP 672

  Fly   444 -AAAAGGAVAAAHSPQPSNHSEIST---------TTSNSDSGIGFNNDCTNISDRILVVDFLAAG 498
             ...:.....||..|:..:..:|:|         |:::.||                     ..|
  Rat   673 PRKESFSGQEAAPGPESPSSEDIATCQNPPQSPETSTSKDS---------------------PPG 716

  Fly   499 AGAAAAAHAGPPTYPAPARPLGIVGIPDNRLTVRAMPDHSALLRSPPA--SSSLRRPNLLASFNL 561
            .|::       ||...|:    ..|:|..:.:....|   .|.:.|||  .||....|:|.|   
  Rat   717 QGSS-------PTTEVPS----CQGLPAGQESTSQDP---LLSQEPPAIPESSASDQNVLPS--- 764

  Fly   562 IQSPATNLTSTRSCDDVLNLFVDDSPRTLAAVASMDDISLHSAAPSLDEGHTFAHPACVPRKMRR 626
                                  .:||               .:..||.|               :
  Rat   765 ----------------------QESP---------------PSQGSLSE---------------K 777

  Fly   627 SLALETPTTPHKLSAQVFGQP-GSRHSLGFEAI--DSVQSSVSGAC------------------- 669
            :||.:| .:|.:|.|...|:| .||.:.....:  ||..|...||.                   
  Rat   778 ALAEQT-ISPGELPAATAGEPSASRPNFVIPEVRLDSAYSQQDGAHGGSSGEDEDAEEGEEGEEG 841

  Fly   670 -----MDQTMDTWASLQNLHKSHKDRTSMSASSS-----SHCLLEATNSEPDLGNRAL-PANAS- 722
                 .|.:.|.:.......:|....|...|...     .:.|...|:||..|...|. |..|| 
  Rat   842 EEDEEDDTSDDNYGDRNEAKRSSLIETGQGAEGGLSLRVQNSLRRRTHSEGSLLQEARGPCFASD 906

  Fly   723 -PFRRAWGQSSFRT-----PRSDKVAKEQQQLGQSSPVRRTASMNASDNDMYIKTLMLDSDLKSS 781
             ....:.|:.:..|     ||:.|     ::||::.......|:..:.:.....|.:.| |:::|
  Rat   907 TTLHCSDGEGTTSTWAIPSPRTLK-----KELGRNGGSMHHLSLFFTGHRKMSGTDLAD-DVEAS 965

  Fly   782 RSQHQLSLLQVPKVLTTPAPPSAITASVAAEGAAQDHG---------CPSS-----WAGSFERML 832
            |.:...::.:..|      ...||.........||..|         .|:|     |:.|.|::|
  Rat   966 RKRKSKNIAKDMK------NKLAIFRRRNESPGAQPAGKADKTTKSFKPTSEEALKWSESLEKLL 1024

  Fly   833 QDAAGMQTFSEFLKKEFSAENIYFWTACERYRLLESEADRVAQAREIFAKHLANNSSDPVNVDSQ 897
            ....|::.|..||:.|||.||:.||.|||.::.::|::...|:|::|||:.:|..:...||:||.
  Rat  1025 LHKYGLEVFQAFLRTEFSEENLEFWLACEDFKKVKSQSKMAAKAKKIFAEFIAIQACKEVNLDSY 1089

  Fly   898 ARSLTEEKLADAAPDIFAPAQKQIFSLMKFDSYQRFIRSDLYKSCVEAEQKNQPL 952
            .|..|:|.|.......|..|||:||.||:.|||.||:|||||...:..::.:.||
  Rat  1090 TREHTKENLQSITRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDLINQKKMSPPL 1144

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
locoNP_732773.1 PDZ_signaling 69..145 CDD:238492 28/92 (30%)
PTB_RGS12 251..391 CDD:269984 30/152 (20%)
RGS_R12-like 828..941 CDD:188661 49/112 (44%)
RGS12_RBD 1073..1145 CDD:176412
RBD 1144..1213 CDD:128731
Rgs3XP_017449084.1 C2_RGS-like 35..154 CDD:176067
PDZ_signaling 195..268 CDD:238492 24/71 (34%)
PHA03307 578..>802 CDD:223039 63/345 (18%)
RGS_RGS3 1020..1133 CDD:188668 49/112 (44%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3589
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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