DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment loco and Rgs11

DIOPT Version :9

Sequence 1:NP_732773.1 Gene:loco / 42672 FlyBaseID:FBgn0020278 Length:1541 Species:Drosophila melanogaster
Sequence 2:NP_001074538.1 Gene:Rgs11 / 50782 MGIID:1354739 Length:466 Species:Mus musculus


Alignment Length:466 Identity:112/466 - (24%)
Similarity:178/466 - (38%) Gaps:104/466 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   548 SSLRRPNLLASFNLI---QSP--ATNLTSTRSCDDVLNLFVDDSPRTLAA----------VASMD 597
            |.::||:|.....::   |.|  ...:.|.|       |.:...|..:|.          ...::
Mouse    14 SRMQRPHLSKMERVVVSMQDPDQGVKMRSQR-------LLITVIPHAVAGRDLVEWLVQKFCILE 71

  Fly   598 DISLHSAAPSLDEGHTFAHPACVPRKMRRSLALETPTTPHKLSAQVFGQ----PGSRHSLG-FEA 657
            |.:||........|:.:      |.:..|.|.|....||::.....|..    |.:..... :.|
Mouse    72 DEALHLGTLLAQHGYIY------PLRESRDLTLRPDETPYRFQTPYFWTSTMWPAAELDYAIYLA 130

  Fly   658 IDSVQSSVSGACMDQTMDTWASLQNLHK--SHK---------------------DRTSMSASSSS 699
            ..::|.  .||.:|...:.:|.   |||  :|.                     ||..:|....:
Mouse   131 KKNIQK--QGALVDYEKEHYAL---LHKKINHAWDLVLMQAREQLRAAKQRRKGDRMVISCQEQT 190

  Fly   700 HCLLEATNSEPDLGNRALPANASPFRRAWGQSSFRTPRSD----KVAKEQQQLGQSSPVRRTASM 760
            :.|:   |..|......|  ...|.|.::..|..:. .||    ::...::.||::. |:.:|.:
Mouse   191 YWLV---NKPPPGAPNIL--EQGPERGSYNPSHMQM-SSDFYKCEIECFRKALGRNR-VKSSACL 248

  Fly   761 NASDNDMYIKTLMLDSDLKSSRSQHQLSLLQVPKVLTTPAPPSA-ITASV------AAEGAAQDH 818
            .|     |:|       ..|....|.       .:::...|.:. ||..|      |...||...
Mouse   249 EA-----YLK-------FSSQHGPHD-------PIMSGCLPSNPWITDDVTYWAMNAPNVAAPTK 294

  Fly   819 GCPSSWAGSFERMLQDAAGMQTFSEFLKKEFSAENIYFWTACERYRLLESEADRVAQAREIFAKH 883
            .....|:.||..:|.|..|...|.:||:|||||||:.||.|||..| ...:|........::.:.
Mouse   295 LRVERWSFSFRELLDDPVGRAHFMDFLQKEFSAENLSFWEACEELR-FGGQAQVPTLVDSVYQQF 358

  Fly   884 LANNSSDPVNVDSQARSLTEEKLADAAPDIFAPAQKQIFSLMKFDSYQRFIRSDLYKSCVE---- 944
            ||..::..:|:||:....|.|.|......:...||..|:.|||.|||.||::||:||..:|    
Mouse   359 LAPGAARWINIDSRTMERTLEGLRQPHRYVLDAAQLHIYMLMKKDSYPRFLKSDIYKGLLEEAVI 423

  Fly   945 -AEQKNQPLPY 954
             .|.|..|.|:
Mouse   424 PLETKRWPFPF 434

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
locoNP_732773.1 PDZ_signaling 69..145 CDD:238492
PTB_RGS12 251..391 CDD:269984
RGS_R12-like 828..941 CDD:188661 43/112 (38%)
RGS12_RBD 1073..1145 CDD:176412
RBD 1144..1213 CDD:128731
Rgs11NP_001074538.1 DEP_RGS7-like 26..113 CDD:239897 17/99 (17%)
GGL 224..284 CDD:128520 14/79 (18%)
RGS 295..420 CDD:295367 46/125 (37%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3589
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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