DRSC/TRiP Functional Genomics Resources

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Protein Alignment loco and CG10939

DIOPT Version :9

Sequence 1:NP_732773.1 Gene:loco / 42672 FlyBaseID:FBgn0020278 Length:1541 Species:Drosophila melanogaster
Sequence 2:NP_524712.1 Gene:CG10939 / 44155 FlyBaseID:FBgn0010620 Length:296 Species:Drosophila melanogaster


Alignment Length:240 Identity:45/240 - (18%)
Similarity:90/240 - (37%) Gaps:58/240 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 ASPAANSGPAPISTSTTPSGSNSQQHQRRRKKRANYNYNGIRTVEVRRGYNGFGFTISGQ--QPC 91
            ::|.:...|.|   .|.|.|.....|                 :..|..::|:||.:..:  :|.
  Fly     2 STPTSPKTPTP---PTLPPGVTKTCH-----------------IVKRPDFDGYGFNLHSEKVKPG 46

  Fly    92 R-LSCIISSSPAEQAGLRSGDFLISVNGLNVSKLPHETVVQLIGNSFGSIRMQI----------- 144
            : :..:.:.||||.|||:.||.::.|||:::....|:.||..|......:|:.:           
  Fly    47 QFIGKVDADSPAEAAGLKEGDRILEVNGVSIGSETHKQVVARIKAIANEVRLLLIDVDGKALEVK 111

  Fly   145 -----AENYYSDSSDEENAHATLRGQLLAASLRHKPRFLHHKAKLHRLRNSPQKKLNPPEAVEPH 204
                 |.....:.|..:|.:...:.::..||           |.:..:.....|:.:...:::..
  Fly   112 PASPPAAACNGNGSASQNGYEGTKQEMPGAS-----------ANISSISMVSTKRSSNASSIQSG 165

  Fly   205 KSKSSPDHPTL--------KPVLEDPPLTANLSKAADVANVSAMV 241
            .:.::.|...:        .||...||...|.||.:...|.:.::
  Fly   166 STMNASDLDVVDRGIPAVAAPVAITPPPVQNGSKPSSPINNNTLM 210

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
locoNP_732773.1 PDZ_signaling 69..145 CDD:238492 22/94 (23%)
PTB_RGS12 251..391 CDD:269984
RGS_R12-like 828..941 CDD:188661
RGS12_RBD 1073..1145 CDD:176412
RBD 1144..1213 CDD:128731
CG10939NP_524712.1 PDZ_signaling 20..101 CDD:238492 23/97 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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