DRSC/TRiP Functional Genomics Resources

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Protein Alignment loco and rgs14a

DIOPT Version :9

Sequence 1:NP_732773.1 Gene:loco / 42672 FlyBaseID:FBgn0020278 Length:1541 Species:Drosophila melanogaster
Sequence 2:XP_009305919.2 Gene:rgs14a / 327368 ZFINID:ZDB-GENE-030131-5579 Length:554 Species:Danio rerio


Alignment Length:682 Identity:171/682 - (25%)
Similarity:279/682 - (40%) Gaps:189/682 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   747 QLGQSSPVRRTASMNA--------SDNDMYIKTLMLDSDLKSSRSQHQLSLLQVPKVLTTPA--- 800
            |.|....||:..|...        ....::.::...|.|:..     ::|.|.||..|.|.|   
Zfish     7 QTGSDRAVRKRLSRRCVCLRGGFRESLSLWAQSCQPDEDMSK-----KMSSLAVPTGLMTQAVSD 66

  Fly   801 -----------PPSAITASVAAEGAAQDHGCPS----SWAGSFERMLQDAAGMQTFSEFLKKEFS 850
                       ..|:::.|.:..|.:|....|:    |||..||.:|:|..|::.|:|||:.|.|
Zfish    67 GELNLRLSSCGSSSSLSESSSRSGGSQAADGPASRVVSWAVCFEHLLEDHVGVRYFTEFLRSEVS 131

  Fly   851 AENIYFWTACERYRLLESE--ADRVAQAREIFAKHLANNSSDPVNVDSQARSLTEEK-LADAAPD 912
            ||||.|:.|||:::.:.:.  .:...:||.|:...|:.:|...||:|..|:  |||: |....||
Zfish   132 AENILFYQACEKFKKIPTSRLEEMKKEARLIYDTFLSESSLHAVNIDDTAQ--TEERELEMPTPD 194

  Fly   913 IFAPAQKQIFSLMKFDSYQRFIRSDLYKSCVEAEQKNQPLPYSGLDLDELLKTNFHLGAFSKL-K 976
            :|..||.|||.|||.|||.||:||.||::|:.|..:::|||..|....:           ||: |
Zfish   195 MFNKAQAQIFKLMKMDSYTRFVRSPLYQNCMLACVESRPLPSIGTPEPK-----------SKMSK 248

  Fly   977 KSASNAEDRRRKSL-LP-WHRKTRSKSR--DRTEIMADMQHALMP-APPVPQNAPLTSASLKLVC 1036
            |||:...:|:...| :| ...||..|.|  :|....||.....|. :....|.:..:::||:||.
Zfish   249 KSATPPSNRKSVELKVPSSDSKTSRKKRLENRGSWGADQSFERMAVSRKESQISVKSNSSLELVS 313

  Fly  1037 GQNSLSDLHSSRSSLSSFDAGTATGGQGASTESVYSLCRVILTDGATTIVQTRPGETVGELVERL 1101
            |...   ..:.|.|::..|....:  .|:.|...|  |.|.|.||..::|..|.|.::.:::..|
Zfish   314 GSGR---AENGRCSVAVSDPEALS--SGSPTADKY--CCVYLPDGTASLVSARAGLSLRDMISSL 371

  Fly  1102 LEKRNLVYPYYDIV--FQGSTKSIDVQQPSQILAGKEVVIERRVAFKLDLPD-PKVISVKSKPKK 1163
            .|||  .:|..|::  .:|..|.:.:.|...:...:::.:|.::.|.|::.. .:.|.:.:|..|
Zfish   372 CEKR--AFPLRDVLLYLRGKDKPLSLDQDCSMFGDQQLSLELKITFALEIAFLGRTIGIIAKSSK 434

  Fly  1164 QLHEVIRPILSKYNYKMEQVQVIMRDTQVPIDLNQPVTMADGQRLRIVMVNSDFQVGGGSSMPPK 1228
            .:.|.:..:|.|                              |:||                   
Zfish   435 SVGEALSSVLEK------------------------------QQLR------------------- 450

  Fly  1229 QSKPMKPLPQGHLDELTNKVFNELLASKADAAASEKSRPVDLCSMKSNEAPSETSSLFERMRRQQ 1293
                    ||                            .|.|....||:|.:.::|:|       
Zfish   451 --------PQ----------------------------DVQLSLSGSNDALNMSTSVF------- 472

  Fly  1294 RDGGNIPASKLPKLKKKSTSSSQQSEEAATTQAVADPKKPIIAKLKAGVKLQVTERVAEHQ--DE 1356
                        :|..|:....:.:.|..|:...|                :...|..:||  |.
Zfish   473 ------------RLANKTVRLDRAALEIQTSSPSA----------------RANSRGRKHQDVDG 509

  Fly  1357 LLEGLKRAQLARLEDQRG--TEINFDLPDFLK 1386
            |:|.|.|||.:|.:||||  |:...::|.||:
Zfish   510 LVELLNRAQCSRADDQRGLLTKEQLEIPQFLQ 541

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
locoNP_732773.1 PDZ_signaling 69..145 CDD:238492
PTB_RGS12 251..391 CDD:269984
RGS_R12-like 828..941 CDD:188661 52/115 (45%)
RGS12_RBD 1073..1145 CDD:176412 18/73 (25%)
RBD 1144..1213 CDD:128731 11/69 (16%)
rgs14aXP_009305919.2 RGS_R12-like 109..223 CDD:188661 52/115 (45%)
RGS12_RBD 343..415 CDD:176412 19/75 (25%)
TGS 423..483 CDD:330245 20/163 (12%)
GoLoco 508..529 CDD:308026 12/20 (60%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 113 1.000 Domainoid score I6078
eggNOG 1 0.900 - - E1_KOG3589
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D144440at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm24643
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
76.920

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