DRSC/TRiP Functional Genomics Resources

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Protein Alignment loco and Rgs9

DIOPT Version :9

Sequence 1:NP_732773.1 Gene:loco / 42672 FlyBaseID:FBgn0020278 Length:1541 Species:Drosophila melanogaster
Sequence 2:NP_062097.1 Gene:Rgs9 / 29481 RGDID:3572 Length:677 Species:Rattus norvegicus


Alignment Length:374 Identity:85/374 - (22%)
Similarity:136/374 - (36%) Gaps:109/374 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   685 KSHKDRTSMSASSSSHCLLEATNSEPDLGNRALPANASPFRRAWGQSSFRTPRSDK------VAK 743
            ::..||.::.....::.|:.  .|.|.:.|..          .:|......|...|      |.|
  Rat   172 RNKADRYALDCQEKAYWLVH--RSPPGMNNVL----------DYGLDRVTNPNEVKKQTVTAVRK 224

  Fly   744 E---QQQLGQSSPVRRTASMNA--------SDNDMYIKTLMLDSDLKSSRSQH---QLSLLQVPK 794
            |   .||....|.|:.:.|:..        |.||..:...:..:...:..:|.   ...|::||.
  Rat   225 EIMYYQQALMRSTVKSSVSLGGIVKYSEQFSSNDAIMSGCLPSNPWITDDTQFWDLNAKLVEVPT 289

  Fly   795 VLTTPAPPSAITASVAAEGAAQDHGCPSSWAGSFERMLQDAAGMQTFSEFLKKEFSAENIYFWTA 859
            .:..                       ..||.:|..:::|..|.|:|..|||||||.||:.||.|
  Rat   290 KMRV-----------------------ERWAFNFSELIRDPKGRQSFQYFLKKEFSGENLGFWEA 331

  Fly   860 CERYRLLESEADRVAQ-AREIFAKHLANNSSDPVNVDSQARSLTEEKLADAAPDIFAPAQKQIFS 923
            ||  .|...:..:|.: |.||:...||..:...:|:|.:...:|.:.|......:...||..|:.
  Rat   332 CE--DLKYGDQSKVKEKAEEIYKLFLAPGARRWINIDGKTMDITVKGLRHPHRYVLDAAQTHIYM 394

  Fly   924 LMKFDSYQRFIRSDLYKSCVEAEQKNQPLPYSGLDLDELLKTNFHLGAFSKLKKSASNAEDRRRK 988
            |||.|||.|:::|.:||                                ..|.|:....|..:|.
  Rat   395 LMKKDSYARYLKSPIYK--------------------------------EMLAKAIEPQETTKRS 427

  Fly   989 SLLPWHRK-TRS-----------------KSRDRTEIMADMQHALMPAP 1019
            |.||:.|: .||                 ::.:..:|....|| |.|:|
  Rat   428 STLPFMRRHLRSSPSPVILRQLEEEERAREAANTVDITQPGQH-LAPSP 475

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
locoNP_732773.1 PDZ_signaling 69..145 CDD:238492
PTB_RGS12 251..391 CDD:269984
RGS_R12-like 828..941 CDD:188661 42/113 (37%)
RGS12_RBD 1073..1145 CDD:176412
RBD 1144..1213 CDD:128731
Rgs9NP_062097.1 DEP_RGS7-like 22..109 CDD:239897
GGL 219..280 CDD:128520 12/60 (20%)
RGS_RGS9 292..412 CDD:188693 45/176 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 530..571
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 639..677
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3589
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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