DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment loco and RGS17

DIOPT Version :10

Sequence 1:NP_732773.1 Gene:loco / 42672 FlyBaseID:FBgn0020278 Length:1541 Species:Drosophila melanogaster
Sequence 2:XP_047274590.1 Gene:RGS17 / 26575 HGNCID:14088 Length:225 Species:Homo sapiens


Alignment Length:229 Identity:62/229 - (27%)
Similarity:107/229 - (46%) Gaps:31/229 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   731 SSFRTPRSDKVAKEQQQLGQSSPVRRTASMNASDND---------MYIKTLMLDSDLK---SSRS 783
            ||...|...::.|.||...:.:|....|..|...|:         .....|.:.::.:   :.|.
Human     6 SSQLGPEVAEMRKRQQSQNEGTPAVSQAPGNQRPNNTCCFCWCCCCSCSCLTVRNEERGENAGRP 70

  Fly   784 QH--QLSLLQVPKVLTTPAPPSAITASVAAEGAAQDHGCPSSWAGSFERMLQDAAGMQTFSEFLK 846
            .|  ::..:||.:....|.....:                 ||:.:|::|::..||...|.|||:
Human    71 THTTKMESIQVLEECQNPTAEEVL-----------------SWSQNFDKMMKAPAGRNLFREFLR 118

  Fly   847 KEFSAENIYFWTACERYRLLESEADRVAQAREIFAKHLANNSSDPVNVDSQARSLTEEKLADAAP 911
            .|:|.||:.||.|||..:..:::.....:||.|:..:::..|...|::||:.|.:....|.|..|
Human   119 TEYSEENLLFWLACEDLKKEQNKKVIEEKARMIYEDYISILSPKEVSLDSRVREVINRNLLDPNP 183

  Fly   912 DIFAPAQKQIFSLMKFDSYQRFIRSDLYKSCVEA 945
            .::..||.||::||..||:.||:.|.:|||.||:
Human   184 HMYEDAQLQIYTLMHRDSFPRFLNSQIYKSFVES 217

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
locoNP_732773.1 PDZ_RGS12-like 70..145 CDD:467194
PTB_RGS12 251..391 CDD:269984
RGS_R12-like 828..941 CDD:188661 40/112 (36%)
RBD1_RGS12_like 1072..1141 CDD:340515
RBD2_RGS12_like 1142..1212 CDD:340587
GoLoco 1354..1375 CDD:214645
RGS17XP_047274590.1 RGS 56..212 CDD:470619 47/172 (27%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.