DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment loco and Rgs7

DIOPT Version :9

Sequence 1:NP_732773.1 Gene:loco / 42672 FlyBaseID:FBgn0020278 Length:1541 Species:Drosophila melanogaster
Sequence 2:XP_006496891.1 Gene:Rgs7 / 24012 MGIID:1346089 Length:495 Species:Mus musculus


Alignment Length:572 Identity:125/572 - (21%)
Similarity:200/572 - (34%) Gaps:172/572 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   520 GIVGIPDNRLTVRAMPDHSALLRSPPASSSLRRPNLLASFNLIQSPATNLTSTRSCDDVL----- 579
            |:.....|.|..|.|.|..|.::.......:|         .::|..:.:.|..|..|::     
Mouse    13 GVADESPNMLVYRKMEDVIARMQDEKNGIPIR---------TVKSFLSKIPSVFSGSDIVQWLIK 68

  Fly   580 NLFVDDSPRTL------AAVASMDDISLHSAAPSLDEG--HTFAHPACVP--------------- 621
            ||.::|....|      ||......||.| .....|:|  :.|..|...|               
Mouse    69 NLTIEDPVEALHLGTLMAAHGYFFPISDH-VLTLKDDGTFYRFQTPYFWPSNCWEPENTDYAVYL 132

  Fly   622 --RKMRRSLALETPTTPHKLSAQ-----------VFGQPGS-------RHSLGFEAIDS------ 660
              |.|:....||......:..|:           :|.|..:       |..:..:.:||      
Mouse   133 CKRTMQNKARLELADYEAESLARLQRAFARKWEFIFMQAEAQAKVDKKRDKIERKILDSQERAFW 197

  Fly   661 -VQSSVSGACMDQT-MDTWAS--LQNLHKSHKDRTSMSASSSSHCLLEATNSEPDLGNRALPANA 721
             |...|.| |::.| :|...|  ::|.||:.|....:.....||                     
Mouse   198 DVHRPVPG-CVNTTEVDIKKSSRMRNPHKTRKSVYGLQNDIRSH--------------------- 240

  Fly   722 SPFRRAWGQSSFRTPRSDKVAKEQQQLGQSSPVRRTASMNASDNDMYIKTLMLDSDLKSSRSQHQ 786
                     |...||..:.....:.:|.|.                 ||...:..|      :|:
Mouse   241 ---------SPTHTPTPETKPPTEDELHQQ-----------------IKYWQIQLD------RHR 273

  Fly   787 LSLLQVPKVLTT----------------PAPP--SAITASVAAEGAAQDHGCPSS-----WAGSF 828
            |.:.:|...|.:                |:.|  |..|.....|.:.:    ||.     |....
Mouse   274 LKMSKVADSLLSYTEQYVEYDPFLVPPDPSNPWLSDDTTFWELEASKE----PSQQRVKRWGFGM 334

  Fly   829 ERMLQDAAGMQTFSEFLKKEFSAENIYFWTACE--RYRLLESEADRVAQAREIFAKHLANNSSDP 891
            :..|:|..|.:.|.:||:.|||:||:.||.|.|  :.|.:.....||   :||:.:.||..:...
Mouse   335 DEALKDPVGREQFLKFLESEFSSENLRFWLAVEDLKRRPIREVPSRV---QEIWQEFLAPGAPSA 396

  Fly   892 VNVDSQARSLTEEKLADAAPDIFAPAQKQIFSLMKFDSYQRFIRSDLYKSCVEAEQKNQPLPYSG 956
            :|:||::...|.:.:.:.....|..||:.|:.|||.|||.|||||..|:..::|::|      ||
Mouse   397 INLDSKSYDKTTQNVKEPGRYTFEDAQEHIYKLMKSDSYPRFIRSSAYQELLQAKRK------SG 455

  Fly   957 LDLDELLKTNFHLGAFSKLKKSASNAEDRRRKSLLPWHRKTRSKSRDRTEIM 1008
            ..:|..          :.|:|.|.|.  .|...:.|.|:......|..|.::
Mouse   456 NSMDRR----------TSLEKFAQNV--GRNLPIFPCHKNCTPTLRASTNLL 495

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
locoNP_732773.1 PDZ_signaling 69..145 CDD:238492
PTB_RGS12 251..391 CDD:269984
RGS_R12-like 828..941 CDD:188661 42/114 (37%)
RGS12_RBD 1073..1145 CDD:176412
RBD 1144..1213 CDD:128731
Rgs7XP_006496891.1 DEP_RGS7-like 29..116 CDD:239897 20/96 (21%)
RGS_DHEX 113..214 CDD:375589 17/101 (17%)
GGL 256..316 CDD:128520 13/82 (16%)
RGS_RGS7 326..446 CDD:188692 43/122 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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