DRSC/TRiP Functional Genomics Resources

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Protein Alignment loco and Rgs16

DIOPT Version :9

Sequence 1:NP_732773.1 Gene:loco / 42672 FlyBaseID:FBgn0020278 Length:1541 Species:Drosophila melanogaster
Sequence 2:NP_035397.2 Gene:Rgs16 / 19734 MGIID:108407 Length:201 Species:Mus musculus


Alignment Length:117 Identity:43/117 - (36%)
Similarity:66/117 - (56%) Gaps:0/117 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly   824 WAGSFERMLQDAAGMQTFSEFLKKEFSAENIYFWTACERYRLLESEADRVAQAREIFAKHLANNS 888
            |..||:.:|....|:..|..|||.|||.||:.||.|||.::.:.|.....::|..||.:::.:.:
Mouse    61 WRESFDLLLNSKNGVAAFHAFLKTEFSEENLEFWLACEEFKKIRSATKLASRAHHIFDEYIRSEA 125

  Fly   889 SDPVNVDSQARSLTEEKLADAAPDIFAPAQKQIFSLMKFDSYQRFIRSDLYK 940
            ...||:|.:.|.||:..|..|....|..||.:..:||:.|||.||::|..|:
Mouse   126 PKEVNIDHETRELTKTNLQAATTSCFDVAQGKTRTLMEKDSYPRFLKSPAYR 177

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
locoNP_732773.1 PDZ_signaling 69..145 CDD:238492
PTB_RGS12 251..391 CDD:269984
RGS_R12-like 828..941 CDD:188661 41/113 (36%)
RGS12_RBD 1073..1145 CDD:176412
RBD 1144..1213 CDD:128731
Rgs16NP_035397.2 RGS_RGS16 65..178 CDD:188665 41/113 (36%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 181..201
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3589
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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