DRSC/TRiP Functional Genomics Resources

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Protein Alignment loco and C52A11.3

DIOPT Version :9

Sequence 1:NP_732773.1 Gene:loco / 42672 FlyBaseID:FBgn0020278 Length:1541 Species:Drosophila melanogaster
Sequence 2:NP_496315.2 Gene:C52A11.3 / 183712 WormBaseID:WBGene00008257 Length:131 Species:Caenorhabditis elegans


Alignment Length:127 Identity:28/127 - (22%)
Similarity:50/127 - (39%) Gaps:38/127 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 PAPISTSTTPSGSNSQQHQRRRKKRANYNYNGIRT---------------VEVRRGYN---GFGF 83
            |:|.||.|..|                |.|:.:..               |::::..|   |.|.
 Worm    18 PSPPSTITLSS----------------YEYSSLAVGIISDLKEEGCDTLLVKLQKDANRKIGMGV 66

  Fly    84 TISGQQPCRLSCIISSSPAEQAGLRSGDFLISVNGLNVSKLPHETVVQLIGNSFGSIRMQIA 145
            .:..:.....:.:..|..||:  |:.||.:::|||..:  |...:||:.:..|...:.:|||
 Worm    67 GVRDRGILITTVVPGSVAAEK--LKVGDRILAVNGRPI--LDQRSVVKSVKASGQRLYLQIA 124

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
locoNP_732773.1 PDZ_signaling 69..145 CDD:238492 18/93 (19%)
PTB_RGS12 251..391 CDD:269984
RGS_R12-like 828..941 CDD:188661
RGS12_RBD 1073..1145 CDD:176412
RBD 1144..1213 CDD:128731
C52A11.3NP_496315.2 PDZ_signaling 51..124 CDD:238492 18/76 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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