DRSC/TRiP Functional Genomics Resources

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Protein Alignment loco and C50F7.3

DIOPT Version :9

Sequence 1:NP_732773.1 Gene:loco / 42672 FlyBaseID:FBgn0020278 Length:1541 Species:Drosophila melanogaster
Sequence 2:NP_501268.1 Gene:C50F7.3 / 183682 WormBaseID:WBGene00016843 Length:313 Species:Caenorhabditis elegans


Alignment Length:314 Identity:64/314 - (20%)
Similarity:105/314 - (33%) Gaps:126/314 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly  1057 GTATGGQGASTESVYSLCRVILTDGATTIVQTRPGETVGELVERLLEKRNLVYP----------- 1110
            |...||||.       |.|.|     .||:..:|...:...|.|.  ||::..|           
 Worm    72 GYQIGGQGV-------LARFI-----QTIINGQPCAKMTYKVIRF--KRHIPRPSGFPPLQKHES 122

  Fly  1111 -------YYDI--VFQGSTKSIDVQQPSQILAGKEVV---IERR---VAFK-----LDLPDPKVI 1155
                   .|::  ||.   ..:|:::    :.||.||   :|..   :.|.     ||:...|.:
 Worm   123 YSTDTLVLYNLKKVFH---LGLDIKE----IEGKIVVCDLVENSLGDMTFSVGETILDVDGEKPL 180

  Fly  1156 SVKSKPKKQLHEVIRPILSKYNYKMEQVQVIMRDTQVPIDLNQPVTMADGQRLRIVMVNSDF--- 1217
            |...     .:|.:|..|...||.:..|::...|....:..|| :|....:..||..:..|.   
 Worm   181 SCTG-----FNERVRKSLLIRNYCLVTVEIPSTDPLKNLLRNQ-ITKTVKEAPRIHKLPPDAAAY 239

  Fly  1218 ---------QVGGGSSMPPKQSKPM---KPLPQGHLDELTNKVFNELLASKADAAASEKSRPVDL 1270
                     :.|||     :|.||:   :|:|                                 
 Worm   240 GAEGIAVLRKFGGG-----EQLKPILLAEPIP--------------------------------- 266

  Fly  1271 CSMKSNEAPSETSSLFERMRRQQRDGGNIPAS-------KLPKLKKKSTSSSQQ 1317
               ||||:......:.|:::.     |::|:.       :||.:|...|.|:.|
 Worm   267 ---KSNESAHSQLKIEEKVKE-----GDVPSGWNSRLFVRLPPMKSAETESTFQ 312

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
locoNP_732773.1 PDZ_signaling 69..145 CDD:238492
PTB_RGS12 251..391 CDD:269984
RGS_R12-like 828..941 CDD:188661
RGS12_RBD 1073..1145 CDD:176412 20/97 (21%)
RBD 1144..1213 CDD:128731 17/73 (23%)
C50F7.3NP_501268.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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