DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment loco and egl-10

DIOPT Version :9

Sequence 1:NP_732773.1 Gene:loco / 42672 FlyBaseID:FBgn0020278 Length:1541 Species:Drosophila melanogaster
Sequence 2:NP_001256419.1 Gene:egl-10 / 179707 WormBaseID:WBGene00001179 Length:639 Species:Caenorhabditis elegans


Alignment Length:532 Identity:127/532 - (23%)
Similarity:190/532 - (35%) Gaps:194/532 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   617 PACVP------RKMRRSLALETPTTPHKLSAQVFGQPGSRHSLGFEAIDSVQSSVSG-ACMDQTM 674
            |.||.      ||:.||                 |:|  ::|.|..|  ::.:|.|| .|     
 Worm   204 PGCVNTTEVDFRKLSRS-----------------GRP--KYSSGGHA--ALAASTSGIGC----- 242

  Fly   675 DTWASLQNLHKSHKDRTSMSAS-SSSHCLLEATNSEPDLGNRALPA--NASPFRRAWGQSSFRTP 736
                            |..|.| :::|..|.:|::    |:...|.  :..|...:.|:|...:.
 Worm   243 ----------------TQYSQSVAAAHASLPSTSN----GSATSPRKNDQEPSTSSGGESPSTSS 287

  Fly   737 RSDKVAKEQQQLGQSSPVRR-TASMNASD--NDMYIK-----------TLMLD-SDLKSSRSQHQ 786
            .:...|........:.||.. ||::||..  |:.|.:           ||.|: ..|.|..|::.
 Worm   288 AAAGTATTSAPSTSTPPVTTITATINAGSFRNNYYTRPGLRRCTQVQDTLKLEIVQLNSRLSKNV 352

  Fly   787 LSLLQVPK--------------VLTTP---APP------------------SAITASVAAEGAAQ 816
            |...:|.:              :||.|   |.|                  ..||..:.....  
 Worm   353 LRTSKVVENYLAYYEQRRVFDPLLTPPGSQADPFQSQPNPWINDTVDFWQHDKITGDIQTRRL-- 415

  Fly   817 DHGCPSSWAGSFERMLQDAAGMQTFSEFLKKEFSAENIYFWTACERYRLLESEADRVAQAREIFA 881
                 ..|..|||.:|.|:.|.:|..:||.||:|.||:.||...::.|...|....| ...||:.
 Worm   416 -----KLWEDSFEELLADSLGRETLQKFLDKEYSGENLRFWWEVQKLRKCSSRMVPV-MVTEIYN 474

  Fly   882 KHL-ANNSSDPVNVDSQARSLTEEKLADAAPDIFAPAQKQIFSLMKFDSYQRFIRSDLYKSCVEA 945
            :.: .|.::.|||||.:...:||:.|.:.....|..|...|:.|||.||||||:||::||..|..
 Worm   475 EFIDTNAATSPVNVDCKVMEVTEDNLKNPNRWSFDEAADHIYCLMKNDSYQRFLRSEIYKDLVLQ 539

  Fly   946 EQKNQPLPYSGLDLDELLKTNFHLGAFSKLKKSASNAEDRRRKSLLPWHRKTRSKSRDRTEIMAD 1010
            .:|               ||.|    .|.:.:.||    ||..|.:     :||...::|     
 Worm   540 SRK---------------KTTF----TSLIARKAS----RRIGSTM-----SRSSQSNKT----- 571

  Fly  1011 MQHALMPAPPVPQNAPLTSASLKLVCGQNSLSDLHSSRSSLSSFDAGTATGGQGASTESVYSLCR 1075
                                             ||:|.|      .|:|..|.|:||.|      
 Worm   572 ---------------------------------LHASAS------LGSALSGHGSSTSS------ 591

  Fly  1076 VILTDGATTIVQ 1087
             :||.|.....|
 Worm   592 -MLTAGGAASSQ 602

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
locoNP_732773.1 PDZ_signaling 69..145 CDD:238492
PTB_RGS12 251..391 CDD:269984
RGS_R12-like 828..941 CDD:188661 44/113 (39%)
RGS12_RBD 1073..1145 CDD:176412 4/15 (27%)
RBD 1144..1213 CDD:128731
egl-10NP_001256419.1 DEP_RGS7-like 29..116 CDD:239897
GGL 334..395 CDD:128520 13/60 (22%)
RGS_R7-like 414..535 CDD:188660 46/128 (36%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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