DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment loco and mpz-4

DIOPT Version :9

Sequence 1:NP_732773.1 Gene:loco / 42672 FlyBaseID:FBgn0020278 Length:1541 Species:Drosophila melanogaster
Sequence 2:NP_500654.1 Gene:mpz-4 / 177255 WormBaseID:WBGene00019165 Length:402 Species:Caenorhabditis elegans


Alignment Length:395 Identity:69/395 - (17%)
Similarity:122/395 - (30%) Gaps:131/395 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    99 SSPAEQAGLRSGDFLISVNGLNVSKLPHETVVQLIGNSFGSIRMQIAENYYSDSSDEENAHATLR 163
            :||.:.| :..||.::.|||..||                     ..|...::..||....|:|:
 Worm    88 ASPFKGA-ILPGDIILQVNGTTVS---------------------FDEKQLTEHVDETTGGASLQ 130

  Fly   164 GQLLAASLRHKPRFLHHKAKLHRLRNSPQKKLNPPEAVEPHKSKSSPDHPTLKPVLEDPPLTANL 228
            ..:                                        |:....||..|..|.       
 Worm   131 SNV----------------------------------------KTVKRKPTTTPKTEP------- 148

  Fly   229 SKAADVANVSAMVRAVGSAALECRVIVGYLGTIEMPKQISHSSKLQTVRSCIRKLRQEKRQPTI- 292
                        |||..|...:.:|:||                         |:...|.:..| 
 Worm   149 ------------VRAPHSLYPDFKVVVG-------------------------KILNSKSETKIT 176

  Fly   293 VLMCITPDSLSLQSSSGGVLATYSSARLNFVSSSSESENRFFGLVTSAVHNTQIEEEYEPSAGSA 357
            ||:....:.:|......|:|||..    :.:..:...:.::..|   .::..|::.:...:....
 Worm   177 VLVARLKNRMSTSKIPNGILATQD----HTIDLAILYQFKYLQL---GLNVQQVDRKVVVNYTIP 234

  Fly   358 AAAGHISISHSCHVFVIDTKLIEH-AQHLQRAHEFRLQCTRDPISNLCLEFPNNSEYVVNLVRSM 421
            .:..|.|::....:..:|.|.|.. |.:.||   ||.....:....|.:|:| |::.:.|:||..
 Worm   235 DSVSHCSLNIGEAIIAVDDKPINTLADNRQR---FREGFEANGWIRLLVEYP-NTDPIKNMVRGQ 295

  Fly   422 YTMRILPPASRSH-------QADYEAGAGAAAAGGAVA----AAHSPQPSNHSEISTTTSNSDSG 475
            .. .::..|.|..       :..:..|..|...|.|:|    ....|......:.....:..|..
 Worm   296 LA-NVMRTAERPQYLLCGDVRKYFVEGIEALKNGKALAPILKEEEGPGEVGKKKSDAKVTKKDPA 359

  Fly   476 IGFNN 480
            :||||
 Worm   360 VGFNN 364

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
locoNP_732773.1 PDZ_signaling 69..145 CDD:238492 10/45 (22%)
PTB_RGS12 251..391 CDD:269984 23/141 (16%)
RGS_R12-like 828..941 CDD:188661
RGS12_RBD 1073..1145 CDD:176412
RBD 1144..1213 CDD:128731
mpz-4NP_500654.1 PDZ <81..130 CDD:381812 14/63 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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