DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment loco and rgs20

DIOPT Version :9

Sequence 1:NP_732773.1 Gene:loco / 42672 FlyBaseID:FBgn0020278 Length:1541 Species:Drosophila melanogaster
Sequence 2:NP_001121502.1 Gene:rgs20 / 100158614 XenbaseID:XB-GENE-976969 Length:218 Species:Xenopus tropicalis


Alignment Length:177 Identity:54/177 - (30%)
Similarity:91/177 - (51%) Gaps:21/177 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   771 TLMLDSDLKSSRSQHQLSLLQVPKVLTTPAPPSAITASVAAEGAAQDHGCPSSWAGSFERMLQDA 835
            |:....|.::.||.:::....:|....:|:|            ..:|   ..||..||::::...
 Frog    51 TVRNQDDERTRRSSNEIRGHGIPNWEESPSP------------TLED---VYSWGQSFDKLMTTP 100

  Fly   836 AGMQTFSEFLKKEFSAENIYFWTACERYRLLESEADR---VAQAREIFAKHLANNSSDPVNVDSQ 897
            ||...|.|||:.|||.||:.||.|||.   |:.||.:   ..:||.|:..:::..|...|::||:
 Frog   101 AGRNAFREFLRTEFSEENMLFWMACEE---LKKEASKNVIEEKARLIYEDYISILSPKEVSLDSR 162

  Fly   898 ARSLTEEKLADAAPDIFAPAQKQIFSLMKFDSYQRFIRSDLYKSCVE 944
            .|.:....:.:.:...|..||.||::||..|||.||:.|.:||:.::
 Frog   163 VREVINRNMLEPSQRTFDDAQLQIYTLMHRDSYPRFMNSAIYKNLLQ 209

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
locoNP_732773.1 PDZ_signaling 69..145 CDD:238492
PTB_RGS12 251..391 CDD:269984
RGS_R12-like 828..941 CDD:188661 42/115 (37%)
RGS12_RBD 1073..1145 CDD:176412
RBD 1144..1213 CDD:128731
rgs20NP_001121502.1 RGS_RGS20 46..206 CDD:188700 53/172 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.