DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment loco and rgs13a

DIOPT Version :10

Sequence 1:NP_732773.1 Gene:loco / 42672 FlyBaseID:FBgn0020278 Length:1541 Species:Drosophila melanogaster
Sequence 2:NP_001082981.2 Gene:rgs13a / 100037359 ZFINID:ZDB-GENE-070410-138 Length:173 Species:Danio rerio


Alignment Length:136 Identity:49/136 - (36%)
Similarity:76/136 - (55%) Gaps:10/136 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly   820 CP----------SSWAGSFERMLQDAAGMQTFSEFLKKEFSAENIYFWTACERYRLLESEADRVA 874
            ||          |.|:.|.|.:|:...||.||..|||.|||.|||.||..||.::...|.:...:
Zfish    31 CPLTEKINPGETSQWSQSLENLLRSKYGMATFHTFLKSEFSDENIEFWLVCEDFKKTRSLSRLSS 95

  Fly   875 QAREIFAKHLANNSSDPVNVDSQARSLTEEKLADAAPDIFAPAQKQIFSLMKFDSYQRFIRSDLY 939
            :|::||.:::...:...:|:|...|.|.::.:.......|..||:.:|.||:.|||.||:|||:|
Zfish    96 RAKKIFERYIKAEAPKEINIDHVTRELIKQNVHAPTKVCFDEAQRIVFGLMERDSYPRFLRSDMY 160

  Fly   940 KSCVEA 945
            :|.:|:
Zfish   161 RSLLES 166

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
locoNP_732773.1 PDZ_RGS12-like 70..145 CDD:467194
PTB_RGS12 251..391 CDD:269984
RGS_R12-like 828..941 CDD:188661 42/112 (38%)
RBD1_RGS12_like 1072..1141 CDD:340515
RBD2_RGS12_like 1142..1212 CDD:340587
GoLoco 1354..1375 CDD:214645
rgs13aNP_001082981.2 RGS 49..162 CDD:470619 42/112 (38%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.