DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mRRF2 and Gfm2

DIOPT Version :9

Sequence 1:NP_732771.2 Gene:mRRF2 / 42670 FlyBaseID:FBgn0051159 Length:740 Species:Drosophila melanogaster
Sequence 2:NP_001094135.1 Gene:Gfm2 / 294672 RGDID:1309854 Length:779 Species:Rattus norvegicus


Alignment Length:750 Identity:305/750 - (40%)
Similarity:455/750 - (60%) Gaps:54/750 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 RSYSS---------------------KIRNIGILAHIDAGKTTTTERMLFYAGKTRALGEVHRGN 70
            |||||                     |||||||:|||||||||||||:|:|:|.||:||:|..|:
  Rat    43 RSYSSPPGIVGNEVKSLHSIINPPVAKIRNIGIMAHIDAGKTTTTERILYYSGYTRSLGDVDDGD 107

  Fly    71 TVTDYLTQERERGITICSSAVTFSWNDHRINLLDTPGHIDFTMEVEQSLYAVDGVVVVLDGTAGV 135
            ||||::.|||||||||.|:|||..|..:|:||:|||||:|||:|||:.|..:||.|.|.|.:|||
  Rat   108 TVTDFMAQERERGITIQSAAVTLDWKGYRVNLIDTPGHVDFTLEVERCLRVLDGAVAVFDASAGV 172

  Fly   136 EAQTVTVWSQADKHKLPRLIFVNKMDRPDADFEKCVSDLKDKLETQPVCLQYPVKNEDGVLAIND 200
            ||||:|||.||||||:||:.|:||||:..|.|...|..:::||:.:|:.||.|:........:.|
  Rat   173 EAQTLTVWRQADKHKIPRICFLNKMDKTGASFNYAVESIREKLKAKPLILQLPIGEARTFQGVVD 237

  Fly   201 VITLERLSW-QQKDLGRSYRNVKLEPSDDLRLLQ---EKRNELIDQLSGLDDELADVVIS--TES 259
            |:..|:|.| ...|.|:.:....|..:.|..||:   |.||.||:|::.||||.||:|:.  :|.
  Rat   238 VVNREKLIWNSDSDDGKDFERKPLSEASDPTLLKETVEARNSLIEQVADLDDEFADLVLGEFSED 302

  Fly   260 FDNVDNALIERALRRATTQQKVVPVLLGSAYKNVGIQRLMDAVNAYLPAPEERNQ-IYDCFGTEV 323
            ||.|....::.|:.|.|..|..||||.|||.||.|:|.|:|||..|||:||||.. ....:..::
  Rat   303 FDLVPAEKLQAAIHRVTLAQAAVPVLCGSALKNKGVQPLLDAVTTYLPSPEEREHGFLQWYKGDL 367

  Fly   324 AGKVFKIVHDKQRGPLTLVRILRGEIKRGMRLISA-RGQAEVVSKLYEPLADEYREVSAVQSGDV 387
            ....||::||||||||..:||..|.:.....:.:. |...|.:|:|..|.||::.|:.::.:|::
  Rat   368 CALAFKVLHDKQRGPLVFLRIYSGTLTPQSAVHNVNRNCTERMSRLLLPFADQHVEIPSLTAGNI 432

  Fly   388 VICAGLKSTVTGDLLTSSQSALKNAQKRYKQSLGNTAAKVE-EDDELDESDELFAIDPQIPDAVY 451
            .:..|||.|.|||.:.||:|:...|.:|        |.|.| :...:.|::.:.....:||:.|:
  Rat   433 ALTVGLKQTATGDTIVSSKSSALAAARR--------AGKGERKPGRISEAESVLLAGVEIPEPVF 489

  Fly   452 FCSIEPPSVSSQTAMEQALKQLQREDPSLRVSYDSVTGQTVLGGMGELHMDIIKSRILSEYKIDV 516
            ||:|||||.:.|..::.||:.||||||||:|..|..:|||||.||||||::||..||..||.::.
  Rat   490 FCTIEPPSAAKQPDLDHALEHLQREDPSLKVKLDPDSGQTVLCGMGELHIEIIHDRIKREYGLET 554

  Fly   517 DLGPLQIAYKETIEAPALTTLSVEKEIAGSKQSVSITLEVVKNQAELFSLDKSPDNLPNL---NT 578
            .|||||:||:|||......|.::::.:...:......|||  ..||      .|..:..:   ::
  Rat   555 YLGPLQVAYRETILNSVRATDTLDRVLGDKRHFARAELEV--RPAE------EPCGVATIEYADS 611

  Fly   579 LRPRILQVLRKGSISALE----RGPRVGGQVVETQIRLHNATIGRGTADSFVMATAAQCVQKLLS 639
            :...:||..|:...:|:.    :||.:|..:.:..:.||:..|..||:.:.|.|..::||||.|.
  Rat   612 VGEDLLQAPREDIENAVHSACLQGPLLGSPIQDVAVTLHSLMIHPGTSTTMVTACISRCVQKALK 676

  Fly   640 TSGTRLLEPIMALQIVAPSERISGIMADLSRRRALINDVLPKGERNKMILVNAPLAELSGYSSAL 704
            .:..::|||:|:|::....|.:|.::|||::||..|.::..: :.||::|...||||:.|||:.|
  Rat   677 KADKQVLEPLMSLEVTVSREYLSPVLADLAQRRGNIQEIQTR-QDNKVVLGFVPLAEIMGYSTVL 740

  Fly   705 RTISSGTASMTMQPCGFSSMNSVDESLAERRAQGL 739
            ||::||:|:..::...:.:|:..|:.....:..||
  Rat   741 RTLTSGSATFALELSTYQAMSPQDQRTLLSQRSGL 775

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mRRF2NP_732771.2 PRK12739 31..733 CDD:237185 299/738 (41%)
Gfm2NP_001094135.1 PRK12739 66..774 CDD:237185 298/724 (41%)
EF-G 72..352 CDD:206673 146/279 (52%)
mtEFG2_II_like 367..448 CDD:293909 29/80 (36%)
EFG_III 485..560 CDD:293919 42/74 (57%)
mtEFG2_like_IV 561..679 CDD:238842 31/125 (25%)
EFG_mtEFG_C 684..761 CDD:239683 28/77 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166335670
Domainoid 1 1.000 293 1.000 Domainoid score I1449
eggNOG 1 0.900 - - E1_COG4108
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H6238
Inparanoid 1 1.050 542 1.000 Inparanoid score I1126
OMA 1 1.010 - - QHG53906
OrthoDB 1 1.010 - - D220174at33208
OrthoFinder 1 1.000 - - FOG0005123
OrthoInspector 1 1.000 - - oto98806
orthoMCL 1 0.900 - - OOG6_103657
Panther 1 1.100 - - LDO PTHR43261
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X4147
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1615.770

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