DRSC/TRiP Functional Genomics Resources

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Protein Alignment btn and Vsx1

DIOPT Version :10

Sequence 1:NP_732768.1 Gene:btn / 42664 FlyBaseID:FBgn0014949 Length:158 Species:Drosophila melanogaster
Sequence 2:NP_001103016.1 Gene:Vsx1 / 689704 RGDID:1305667 Length:369 Species:Rattus norvegicus


Alignment Length:102 Identity:33/102 - (32%)
Similarity:54/102 - (52%) Gaps:8/102 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    59 NDQWLQNEAPTGQELPSQRSKLRAIS------SNRKERTAFSKTQLKQLEAEFCYSNYLTRLRRY 117
            :.|..:|.:.:..:.||:......:|      ..|:.||.|:..||::||..|..::|.....|.
  Rat   135 SQQRSENISTSDGDSPSEEKNDPKMSLTLGKRKKRRHRTVFTAHQLEELEKAFGEAHYPDVYARE 199

  Fly   118 EIAVALELTERQVKVWFQNRRMKCKRIKLEEQQGSSA 154
            .:||..||.|.:::|||||||.|.:  |.|::.|.|:
  Rat   200 MLAVKTELPEDRIQVWFQNRRAKWR--KREKRWGGSS 234

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
btnNP_732768.1 Homeodomain 87..143 CDD:459649 24/55 (44%)
Vsx1NP_001103016.1 Homeodomain 169..225 CDD:459649 24/57 (42%)

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