DRSC/TRiP Functional Genomics Resources

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Protein Alignment btn and Hoxa6

DIOPT Version :10

Sequence 1:NP_732768.1 Gene:btn / 42664 FlyBaseID:FBgn0014949 Length:158 Species:Drosophila melanogaster
Sequence 2:NP_001178016.1 Gene:Hoxa6 / 685732 RGDID:1590236 Length:233 Species:Rattus norvegicus


Alignment Length:60 Identity:34/60 - (56%)
Similarity:44/60 - (73%) Gaps:0/60 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 SSNRKERTAFSKTQLKQLEAEFCYSNYLTRLRRYEIAVALELTERQVKVWFQNRRMKCKR 143
            |..|:.|..:::.|..:||.||.::.||||.||.|||.||.|||||:|:||||||||.|:
  Rat   153 SHGRRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKK 212

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
btnNP_732768.1 Homeodomain 87..143 CDD:459649 32/55 (58%)
Hoxa6NP_001178016.1 Homeodomain 156..212 CDD:459649 32/55 (58%)

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