DRSC/TRiP Functional Genomics Resources

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Protein Alignment btn and ap

DIOPT Version :10

Sequence 1:NP_732768.1 Gene:btn / 42664 FlyBaseID:FBgn0014949 Length:158 Species:Drosophila melanogaster
Sequence 2:NP_724428.1 Gene:ap / 35509 FlyBaseID:FBgn0267978 Length:469 Species:Drosophila melanogaster


Alignment Length:206 Identity:42/206 - (20%)
Similarity:73/206 - (35%) Gaps:63/206 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 HANVYQESYCYEDITKSWLNQTEGYTD----CSYVY------DHSASSSYADYNKLETNWCNEAN 59
            |.|.:..:.|:..:||   ....|..|    |...|      |.::||..|.| .....:.:..|
  Fly   232 HVNCFCCTVCHTPLTK---GDQYGIIDALIYCRTHYSIAREGDTASSSMSATY-PYSAQFGSPHN 292

  Fly    60 DQWLQNE------APTGQELPSQR----------------------------------------- 77
            |....:.      .|||..:|:..                                         
  Fly   293 DSSSPHSDPSRSIVPTGIFVPASHVINGLPQPARQKGRPRKRKPKDIEAFTANIDLNTEYVDFGR 357

  Fly    78 -SKLRAISSNRKERTAFSKTQLKQLEAEFCYSNYLTRLRRYEIAVALELTERQVKVWFQNRRMKC 141
             |.|.:.|..::.||:|...||:.:::.|..::........:::....|.:|.::|||||.|.|.
  Fly   358 GSHLSSSSRTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQVWFQNARAKW 422

  Fly   142 KRIKLEEQQGS 152
            :|:.: :|.||
  Fly   423 RRMMM-KQDGS 432

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
btnNP_732768.1 Homeodomain 87..143 CDD:459649 15/55 (27%)
apNP_724428.1 LIM1_Lhx2_Lhx9 148..201 CDD:188755
LIM2_Lhx2_Lhx9 206..264 CDD:188763 8/34 (24%)
Homeodomain 368..424 CDD:459649 15/55 (27%)
Blue background indicates that the domain is not in the aligned region.

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