DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment btn and Hoxd3

DIOPT Version :9

Sequence 1:NP_732768.1 Gene:btn / 42664 FlyBaseID:FBgn0014949 Length:158 Species:Drosophila melanogaster
Sequence 2:NP_001257967.1 Gene:Hoxd3 / 288152 RGDID:1588601 Length:432 Species:Rattus norvegicus


Alignment Length:106 Identity:45/106 - (42%)
Similarity:61/106 - (57%) Gaps:3/106 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 SASSSYADYNKLETNWCNEANDQWLQ-NEAPTGQELPSQRSKLRAISSNRKERTAFSKTQLKQLE 102
            :||||.:..:|....|..|:.....| |...|..|....:|.....|  ::.|||::..||.:||
  Rat   148 NASSSSSTISKQIFPWMKESRQNSKQKNSCATSGENCEDKSPPGPAS--KRVRTAYTSAQLVELE 210

  Fly   103 AEFCYSNYLTRLRRYEIAVALELTERQVKVWFQNRRMKCKR 143
            .||.::.||.|.||.|:|..|.|||||:|:||||||||.|:
  Rat   211 KEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 251

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
btnNP_732768.1 Homeobox 90..142 CDD:278475 31/51 (61%)
Hoxd3NP_001257967.1 Homeobox 198..251 CDD:395001 31/52 (60%)
DUF4074 369..430 CDD:404218
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000007
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X14
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.900

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