DRSC/TRiP Functional Genomics Resources

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Protein Alignment btn and hoxa3

DIOPT Version :10

Sequence 1:NP_732768.1 Gene:btn / 42664 FlyBaseID:FBgn0014949 Length:158 Species:Drosophila melanogaster
Sequence 2:NP_001120901.1 Gene:hoxa3 / 100151729 XenbaseID:XB-GENE-482267 Length:406 Species:Xenopus tropicalis


Alignment Length:106 Identity:44/106 - (41%)
Similarity:63/106 - (59%) Gaps:8/106 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 WCNEANDQWLQNEA---PTGQELPSQRSKLRAISSNRKERTAFSKTQLKQLEAEFCYSNYLTRLR 115
            |..|:.....|.:|   .:|:.....:|. ...||:::.|||::..||.:||.||.::.||.|.|
 Frog   130 WMKESRQNTKQQKAGSSSSGESCAGDKSP-PGQSSSKRARTAYTSAQLVELEKEFHFNRYLCRPR 193

  Fly   116 RYEIAVALELTERQVKVWFQNRRMKCKRIKLEEQQGSSAKT 156
            |.|:|..|.|||||:|:||||||||.|:    :|:|.|..|
 Frog   194 RVEMANLLNLTERQIKIWFQNRRMKYKK----DQKGKSMMT 230

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
btnNP_732768.1 Homeodomain 87..143 CDD:459649 31/55 (56%)
hoxa3NP_001120901.1 Homeodomain 165..221 CDD:459649 31/55 (56%)
DUF4074 343..404 CDD:463833
Blue background indicates that the domain is not in the aligned region.

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